Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c15
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|...   108   7e-25
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    66   6e-12
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    29   0.69 
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   4.8  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    26   4.8  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   4.8  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    26   6.4  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    25   8.5  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   8.5  

>SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score =  108 bits (260), Expect = 7e-25
 Identities = 62/172 (36%), Positives = 94/172 (54%), Gaps = 4/172 (2%)
 Frame = -1

Query: 516 LHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIKLKG 337
           L+  I  + +  LNE++  SGK VFKPWD R D +  VESDAD++LLF +PF G   LK 
Sbjct: 24  LYSCIRKESIVTLNEAVPDSGKLVFKPWDLRYDDTDIVESDADDQLLFQVPFAGAATLKS 83

Query: 336 IKVASEDTDSHPSKLRLFKNRPNMTFDDV-MIEPDQVFELQKDTDG--ILEYCPKIVTFS 166
           I V     ++ P    LF NR ++ FD +  ++  + FE     +G  I E+  K   + 
Sbjct: 84  ILVRIFPNETAPHSFSLFPNRTDLDFDTIGDVQATETFEFPLTFEGSHIFEFPVKTRLYQ 143

Query: 165 SVSHLTMHFPKNFGA-ETTKIYYIGLKGEWTPSHRHGVTLCSYEVMPNLDDH 13
           ++ +L + F K+ G+ + T+I YIGL+G + P  +    +  YE  P   DH
Sbjct: 144 NLQNLNIFFTKSDGSDDPTQIAYIGLRGSFVP-FKGDPVVTIYEATPRPSDH 194


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 65.7 bits (153), Expect = 6e-12
 Identities = 51/148 (34%), Positives = 75/148 (50%), Gaps = 7/148 (4%)
 Frame = -1

Query: 504 IDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIKLKGIKV- 328
           I+   LECLN+  +   KS F       + S F+ESD DE+L+  IPF   +K+  I + 
Sbjct: 133 IENPQLECLNQQDDHDLKSAFNS-----NPSSFLESDVDEQLMIYIPFLEVVKVHSIAIT 187

Query: 327 -ASEDTDSHPSKLRLFKNRP-NMTFDDV-MIEPDQVFE-LQKDTDGILEYCP-KIVTFSS 163
               +T S P  ++L+ N+P N++F+D     P QV E +  + D      P + V F  
Sbjct: 188 PVKGETSSAPKTIKLYINQPNNLSFEDAESFTPTQVIEDIVYEQDDQPTIIPLRFVKFQR 247

Query: 162 VSHLTMHFPKNFG-AETTKIYYIGLKGE 82
           V+ L +    N G  ETTKI  + L GE
Sbjct: 248 VNSLVIFIYSNVGEEETTKISRLELFGE 275


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = -1

Query: 330 VASEDTDSHPSKLRLFKNRP--NMTFDDVMIEPDQVFELQKDTDGILEYCPKIVTFSSVS 157
           +AS DTDSH S   L K RP  N+ ++D  ++ D     + + D   +Y   I TF+ + 
Sbjct: 21  LASIDTDSHLSPKVLEKLRPTENLAYEDDSLDDDTWRSKRWEFD--YQY-SGISTFAHLP 77

Query: 156 HLTMHFPKNFGAETTKIYYIGLKGEWTPSHRHG 58
           H+     +   +E   I  IG+  +   SHR G
Sbjct: 78  HVRCLVEQ---SEDFDIAIIGVPFDTAVSHRPG 107


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 75  VSILLLIQCNKFLLFLPQSSLE-SALLDVILKK 170
           V  LLL  C +FLL  P++ L+  + L+ I KK
Sbjct: 578 VLALLLESCGRFLLRYPETKLQMQSFLEAIQKK 610


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 150 TMHFPKNFGAETTKIYYIGLKGEWTPSHRHGVTLCSYEVMP 28
           T+  PK+ GA    +Y  GL  E     + G+  C YE  P
Sbjct: 43  TITGPKSQGASQAMLYATGLNEEDMKKPQVGIASCWYEGNP 83


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 328 NLYSFKFYISSEWYIKQQFFISITFNKFASIQSFVPRF 441
           NLY F + +   W+ ++   I+IT + F    +F+P F
Sbjct: 204 NLYEFSYQLEEGWFSRRCSKINITGSVF---DNFIPSF 238


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -1

Query: 489 LECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGN 352
           L+  NE LE  G S F  +  R+  SKF + D          F GN
Sbjct: 167 LDIHNERLEFLGDSFFNLFTTRIIFSKFPQMDEGSLSKLRAKFVGN 212


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 471 IRSNIPSGPNQSFHEDCIVYQYLQHYRDHGHGYNDDETF 587
           IR N     N   + D   Y Y+QH R+ G   N+D T+
Sbjct: 63  IRPNEGEAANYGIYFDDTEYDYMQHLRNIG---NEDATW 98


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 627 LRLSQNTIDSCVFYVLLVLNLYK--LHHNLAI 716
           LRLSQN ID+ V ++     L K  LH +LA+
Sbjct: 434 LRLSQNDIDNVVKFLTSCYKLKKLVLHDSLAL 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,103,196
Number of Sequences: 5004
Number of extensions: 66405
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)