Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12c15
(735 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY060988-1|AAL28536.2| 230|Drosophila melanogaster GM14633p pro... 258 6e-69
AE014134-2228|AAF53211.1| 211|Drosophila melanogaster CG6153-PA... 258 6e-69
AF143404-1|AAF66635.1| 287|Drosophila melanogaster thioredoxin-... 48 1e-05
AY089550-1|AAL90288.1| 287|Drosophila melanogaster LD26837p pro... 46 4e-05
AE014296-996|AAF50750.1| 287|Drosophila melanogaster CG5495-PA ... 46 4e-05
DQ138920-1|ABA86526.1| 1505|Drosophila melanogaster CG17766 prot... 29 6.6
BT015183-1|AAT94412.1| 1525|Drosophila melanogaster SD05962p pro... 29 6.6
AY051974-1|AAK93398.1| 343|Drosophila melanogaster LD43670p pro... 29 6.6
AL021086-3|CAA15934.1| 1471|Drosophila melanogaster EG:86E4.3 pr... 29 6.6
AE014298-295|AAF45693.1| 1525|Drosophila melanogaster CG17766-PA... 29 6.6
AY058554-1|AAL13783.1| 455|Drosophila melanogaster LD24746p pro... 29 8.7
AE013599-3696|AAF47070.1| 455|Drosophila melanogaster CG4735-PA... 29 8.7
>AY060988-1|AAL28536.2| 230|Drosophila melanogaster GM14633p
protein.
Length = 230
Score = 258 bits (632), Expect = 6e-69
Identities = 112/178 (62%), Positives = 145/178 (81%)
Frame = -1
Query: 537 DIGIQYNLHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFT 358
++GI+Y+L+ KIDLD++ECLNE +G GKSVFKP++KR D SK+VESDADEELLFNIPFT
Sbjct: 43 EMGIEYSLYTKIDLDNVECLNEETDGQGKSVFKPYEKRQDLSKYVESDADEELLFNIPFT 102
Query: 357 GNIKLKGIKVASEDTDSHPSKLRLFKNRPNMTFDDVMIEPDQVFELQKDTDGILEYCPKI 178
GNIKLKGI ++ + DSHP+ +++FKNRP MTFDD +PDQ F+L +D G +EY PK+
Sbjct: 103 GNIKLKGIIISGANDDSHPNMVKIFKNRPRMTFDDARAKPDQEFQLTRDARGEIEYSPKV 162
Query: 177 VTFSSVSHLTMHFPKNFGAETTKIYYIGLKGEWTPSHRHGVTLCSYEVMPNLDDHKLK 4
VTFSSV HL+++FP NFG + T+IYYIGL+GE+T +H HGVT+C+YE N DHK K
Sbjct: 163 VTFSSVHHLSLYFPSNFGEDITRIYYIGLRGEFTEAHYHGVTICNYESRANAADHKEK 220
>AE014134-2228|AAF53211.1| 211|Drosophila melanogaster CG6153-PA
protein.
Length = 211
Score = 258 bits (632), Expect = 6e-69
Identities = 112/178 (62%), Positives = 145/178 (81%)
Frame = -1
Query: 537 DIGIQYNLHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFT 358
++GI+Y+L+ KIDLD++ECLNE +G GKSVFKP++KR D SK+VESDADEELLFNIPFT
Sbjct: 24 EMGIEYSLYTKIDLDNVECLNEETDGQGKSVFKPYEKRQDLSKYVESDADEELLFNIPFT 83
Query: 357 GNIKLKGIKVASEDTDSHPSKLRLFKNRPNMTFDDVMIEPDQVFELQKDTDGILEYCPKI 178
GNIKLKGI ++ + DSHP+ +++FKNRP MTFDD +PDQ F+L +D G +EY PK+
Sbjct: 84 GNIKLKGIIISGANDDSHPNMVKIFKNRPRMTFDDARAKPDQEFQLTRDARGEIEYSPKV 143
Query: 177 VTFSSVSHLTMHFPKNFGAETTKIYYIGLKGEWTPSHRHGVTLCSYEVMPNLDDHKLK 4
VTFSSV HL+++FP NFG + T+IYYIGL+GE+T +H HGVT+C+YE N DHK K
Sbjct: 144 VTFSSVHHLSLYFPSNFGEDITRIYYIGLRGEFTEAHYHGVTICNYESRANAADHKEK 201
>AF143404-1|AAF66635.1| 287|Drosophila melanogaster
thioredoxin-like protein TXL protein.
Length = 287
Score = 48.0 bits (109), Expect = 1e-05
Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Frame = -1
Query: 516 LHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIKLKG 337
L+ I ECLNE+ + + K W +++SD DE+L+ +I F +K++
Sbjct: 125 LNTFISKQECECLNEADDHNLKHA---WPSA---GGYLQSDCDEQLILSITFNQAVKIQS 178
Query: 336 IKVASEDTDSHPSKLRLFKNRPNMTFDDVMIEPDQVFEL---QKDTDGILEYCPKIVTFS 166
+K + + P ++LF N+P D+ + V +L QK+ + + + V F
Sbjct: 179 LKFKA-PSHLGPKDVKLFINQPRTIDFDMAESMNSVQDLSLAQKELESGVPVNLRYVKFQ 237
Query: 165 SVSHLTMHFPKN-FGAETTKIYYIGLKG 85
+V ++ + N G + T+I YIG G
Sbjct: 238 NVQNIQIFVKNNQSGGDVTQIDYIGFIG 265
>AY089550-1|AAL90288.1| 287|Drosophila melanogaster LD26837p
protein.
Length = 287
Score = 46.4 bits (105), Expect = 4e-05
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 4/148 (2%)
Frame = -1
Query: 516 LHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIKLKG 337
L+ I ECLNE+ + + K +++SD DE+L+ +I F +K+
Sbjct: 125 LNTFISKQECECLNEADDHNLKHALA------SAGGYLQSDCDEQLILSITFNQAVKIHS 178
Query: 336 IKVASEDTDSHPSKLRLFKNRPNMTFDDVMIEPDQVFEL---QKDTDGILEYCPKIVTFS 166
+K + + P ++LF N+P D+ + V +L QK+ + + + V F
Sbjct: 179 LKFKA-PSHLGPKDVKLFINQPRTIDFDMAESMNSVQDLSLAQKELESGVPVNLRYVKFQ 237
Query: 165 SVSHLTMHFPKN-FGAETTKIYYIGLKG 85
+V ++ + N G + T+I YIG G
Sbjct: 238 NVQNIQIFVKNNQSGGDVTQIDYIGFIG 265
>AE014296-996|AAF50750.1| 287|Drosophila melanogaster CG5495-PA
protein.
Length = 287
Score = 46.4 bits (105), Expect = 4e-05
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 4/148 (2%)
Frame = -1
Query: 516 LHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIKLKG 337
L+ I ECLNE+ + + K +++SD DE+L+ +I F +K+
Sbjct: 125 LNTFISKQECECLNEADDHNLKHALA------SAGGYLQSDCDEQLILSITFNQAVKIHS 178
Query: 336 IKVASEDTDSHPSKLRLFKNRPNMTFDDVMIEPDQVFEL---QKDTDGILEYCPKIVTFS 166
+K + + P ++LF N+P D+ + V +L QK+ + + + V F
Sbjct: 179 LKFKA-PSHLGPKDVKLFINQPRTIDFDMAESMNSVQDLSLAQKELESGVPVNLRYVKFQ 237
Query: 165 SVSHLTMHFPKN-FGAETTKIYYIGLKG 85
+V ++ + N G + T+I YIG G
Sbjct: 238 NVQNIQIFVKNNQSGGDVTQIDYIGFIG 265
>DQ138920-1|ABA86526.1| 1505|Drosophila melanogaster CG17766 protein.
Length = 1505
Score = 29.1 bits (62), Expect = 6.6
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -1
Query: 204 GILEYCPKIVTFSSVSHLTMHFPKNFGAETTKIYYIGL---KGEWTPSHRHGVTLCSY 40
G+ E CP I F+ +SH GA + + L K + P+H H +T ++
Sbjct: 1378 GLAELCPAICKFNQISHCAQTRRIAVGANSGNLAIYELRQNKCQMIPAHTHPITSLAF 1435
>BT015183-1|AAT94412.1| 1525|Drosophila melanogaster SD05962p protein.
Length = 1525
Score = 29.1 bits (62), Expect = 6.6
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -1
Query: 204 GILEYCPKIVTFSSVSHLTMHFPKNFGAETTKIYYIGL---KGEWTPSHRHGVTLCSY 40
G+ E CP I F+ +SH GA + + L K + P+H H +T ++
Sbjct: 1387 GLAELCPAICKFNQISHCAQTRRIAVGANSGNLAIYELRQNKCQMIPAHTHPITSLAF 1444
>AY051974-1|AAK93398.1| 343|Drosophila melanogaster LD43670p
protein.
Length = 343
Score = 29.1 bits (62), Expect = 6.6
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -1
Query: 204 GILEYCPKIVTFSSVSHLTMHFPKNFGAETTKIYYIGL---KGEWTPSHRHGVTLCSY 40
G+ E CP I F+ +SH GA + + L K + P+H H +T ++
Sbjct: 205 GLAELCPAICKFNQISHCAQTRRIAVGANSGNLAIYELRQNKCQMIPAHTHPITSLAF 262
>AL021086-3|CAA15934.1| 1471|Drosophila melanogaster EG:86E4.3
protein.
Length = 1471
Score = 29.1 bits (62), Expect = 6.6
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -1
Query: 204 GILEYCPKIVTFSSVSHLTMHFPKNFGAETTKIYYIGL---KGEWTPSHRHGVTLCSY 40
G+ E CP I F+ +SH GA + + L K + P+H H +T ++
Sbjct: 1333 GLAELCPAICKFNQISHCAQTRRIAVGANSGNLAIYELRQNKCQMIPAHTHPITSLAF 1390
>AE014298-295|AAF45693.1| 1525|Drosophila melanogaster CG17766-PA
protein.
Length = 1525
Score = 29.1 bits (62), Expect = 6.6
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -1
Query: 204 GILEYCPKIVTFSSVSHLTMHFPKNFGAETTKIYYIGL---KGEWTPSHRHGVTLCSY 40
G+ E CP I F+ +SH GA + + L K + P+H H +T ++
Sbjct: 1387 GLAELCPAICKFNQISHCAQTRRIAVGANSGNLAIYELRQNKCQMIPAHTHPITSLAF 1444
>AY058554-1|AAL13783.1| 455|Drosophila melanogaster LD24746p
protein.
Length = 455
Score = 28.7 bits (61), Expect = 8.7
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = -1
Query: 504 IDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIKLKGI 334
+D D ++L+ G+ + PW D + + S+ DE + I TG++ + +
Sbjct: 44 LDSDSDSDYEDALDVDGEELRSPWTYSFDELRALMSEIDENIYKRITRTGHVDREAV 100
>AE013599-3696|AAF47070.1| 455|Drosophila melanogaster CG4735-PA
protein.
Length = 455
Score = 28.7 bits (61), Expect = 8.7
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = -1
Query: 504 IDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIKLKGI 334
+D D ++L+ G+ + PW D + + S+ DE + I TG++ + +
Sbjct: 44 LDSDSDSDYEDALDVDGEELRSPWTYSFDELRALMSEIDENIYKRITRTGHVDREAV 100
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,210,490
Number of Sequences: 53049
Number of extensions: 646011
Number of successful extensions: 1589
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1589
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3314233461
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -