Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c15
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.7  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   6.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.1  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 635 IPKYHRQLCVLCFTCFELI 691
           I KY R +  +CF CF L+
Sbjct: 404 IDKYSRIVFPVCFVCFNLM 422


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 635 IPKYHRQLCVLCFTCFELI 691
           I KY R +  +CF CF L+
Sbjct: 404 IDKYSRIVFPVCFVCFNLM 422


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 635 IPKYHRQLCVLCFTCFELI 691
           I KY R +  +CF CF L+
Sbjct: 342 IDKYSRIVFPVCFVCFNLM 360


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 168 SSVSHLTMHFPKNFGAETTKIYY 100
           SS+S+ T+H   N+     K+YY
Sbjct: 316 SSLSNKTIHNNNNYKNYNKKLYY 338


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 534 YLQHYRDHGHG 566
           Y QH +DHG G
Sbjct: 93  YYQHQQDHGSG 103


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 272  GLFLNNLNFDGCESVSSDATFIPLSFIFPVNGI 370
            G F+N    D  ESV S  T   L F++  N I
Sbjct: 911  GKFMNVNMLDTYESVHSFPTETGLPFVYTFNVI 943


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,442
Number of Sequences: 438
Number of extensions: 4458
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)