Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c13
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    54   3e-08
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    52   7e-08
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    30   0.40 

>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 28/46 (60%), Positives = 33/46 (71%)
 Frame = -2

Query: 748 EESYKDSTLIXQLLRDNLTLWTSDMQGDGESADAEQKEPAQDGEDQ 611
           EESYKDSTLI QLLRDNLTLWTSD + + +SA  E    A   E++
Sbjct: 212 EESYKDSTLIMQLLRDNLTLWTSDAEYN-QSAKEEAPAAAAASENE 256


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 52.4 bits (120), Expect = 7e-08
 Identities = 27/42 (64%), Positives = 30/42 (71%)
 Frame = -2

Query: 748 EESYKDSTLIXQLLRDNLTLWTSDMQGDGESADAEQKEPAQD 623
           EESYKDSTLI QLLRDNLTLWTSD +    +A     E AQ+
Sbjct: 213 EESYKDSTLIMQLLRDNLTLWTSDAEYSAAAAGG-NTEGAQE 253


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 20/47 (42%), Positives = 24/47 (51%)
 Frame = +3

Query: 609 SWSSPSCAGSFCSASADSPSPCMSEVHSVRLSRSSCXMSVESL*LSS 749
           S SS S + +F SAS  SPS   S + S     SS   S  SL +SS
Sbjct: 593 SISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISS 639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,428,585
Number of Sequences: 5004
Number of extensions: 42524
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)