Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12c13
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 61 8e-10
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 59 3e-09
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 58 1e-08
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 56 3e-08
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 56 4e-08
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 52 6e-07
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 50 1e-06
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 42 4e-04
01_01_0181 - 1548392-1548466,1548689-1549379,1549475-1549604,154... 29 3.0
05_02_0037 + 5883285-5884292 29 3.9
12_02_0330 - 17612867-17613161,17613376-17613459,17613554-176137... 29 5.2
10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076 28 9.1
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 61.3 bits (142), Expect = 8e-10
Identities = 31/40 (77%), Positives = 32/40 (80%), Gaps = 2/40 (5%)
Frame = -2
Query: 748 EESYKDSTLIXQLLRDNLTLWTSDMQGDG--ESADAEQKE 635
EESYKDSTLI QLLRDNLTLWTSDMQ DG E DA + E
Sbjct: 222 EESYKDSTLIMQLLRDNLTLWTSDMQDDGGDEMRDATKPE 261
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/44 (63%), Positives = 30/44 (68%)
Frame = -2
Query: 748 EESYKDSTLIXQLLRDNLTLWTSDMQGDGESADAEQKEPAQDGE 617
EESYKDSTLI QLLRDNLTLWTSD DG E P + G+
Sbjct: 195 EESYKDSTLIMQLLRDNLTLWTSDANDDGGDEIKEAAAPKEPGD 238
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/43 (65%), Positives = 30/43 (69%)
Frame = -2
Query: 748 EESYKDSTLIXQLLRDNLTLWTSDMQGDGESADAEQKEPAQDG 620
EESYKDSTLI QLLRDNLTLWTSD DG E +P +G
Sbjct: 217 EESYKDSTLIMQLLRDNLTLWTSDNAEDGGDEIKEAAKPEGEG 259
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/45 (62%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = -2
Query: 748 EESYKDSTLIXQLLRDNLTLWTSDMQGD-GESADAEQKEPAQDGE 617
EESYKDSTLI QLLRDNLTLWTSD+ D G+ K A +G+
Sbjct: 212 EESYKDSTLIMQLLRDNLTLWTSDLTEDGGDEVKEASKGDACEGQ 256
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 55.6 bits (128), Expect = 4e-08
Identities = 27/45 (60%), Positives = 34/45 (75%)
Frame = -2
Query: 748 EESYKDSTLIXQLLRDNLTLWTSDMQGDGESADAEQKEPAQDGED 614
EESYKDSTLI QLLRDNLTLWTSD+ D +A+ ++ P +D +
Sbjct: 218 EESYKDSTLIMQLLRDNLTLWTSDISED--TAEEIREAPKRDSSE 260
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 51.6 bits (118), Expect = 6e-07
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -2
Query: 748 EESYKDSTLIXQLLRDNLTLWTSDM 674
EESYKDSTLI QLLRDNLTLWTSD+
Sbjct: 436 EESYKDSTLIMQLLRDNLTLWTSDI 460
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = -2
Query: 748 EESYKDSTLIXQLLRDNLTLWTSDMQGDGE 659
EE+YKDSTLI QLLRDNL LW SDM D +
Sbjct: 202 EENYKDSTLIMQLLRDNLALWNSDMADDAD 231
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = -2
Query: 745 ESYKDSTLIXQLLRDNLTLWTSDMQGDGESAD 650
E YKDS L+ QLL++NL LWTS++ G S D
Sbjct: 192 EGYKDSMLMMQLLKENLALWTSELTGGETSKD 223
>01_01_0181 -
1548392-1548466,1548689-1549379,1549475-1549604,
1549704-1549884
Length = 358
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 597 HYETSWSSPSCAGSFCSASADSPSPCMSEVHSVRLSRSS 713
H + S S+ + AGS +A+A P PC SE+ + +SS
Sbjct: 214 HIDPSPSTSTSAGSTAAAAAFQPLPCFSELRWDQQMQSS 252
>05_02_0037 + 5883285-5884292
Length = 335
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 630 AGSFCSASADSPSPCMSEVHSVRLSRSSCXMSVESL*LSS 749
AG A+A +P+ ++ +H LS SSC S + LSS
Sbjct: 11 AGLLAVAAAPAPAAVLTTMHGRELSHSSCSFSSAAASLSS 50
>12_02_0330 -
17612867-17613161,17613376-17613459,17613554-17613744,
17614085-17614995,17615081-17615252,17615337-17615412,
17615515-17615634,17615841-17616005,17616096-17616186,
17616644-17616785,17616848-17617042,17617132-17617185,
17617299-17617397,17618181-17618296,17618376-17618442
Length = 925
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -1
Query: 551 KSQPAVPTRGPGTALSLFVFDYGKYIICNI-ILWYCILTVV 432
+S P V PG + LFVFD K+ +C + +L YC++ V
Sbjct: 864 RSTPFVDGACPGISCPLFVFD--KFWVCFVEVLSYCMICPV 902
>10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076
Length = 748
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -2
Query: 322 LL*LLTSIVIEIFVYFNLFFLISQSISKMKCSAPPPGRSVVVTLC*VKVMHLRKYLLSAQ 143
+L +LT I+IE + F +I +M CS P R + + V V+++R LLS+
Sbjct: 444 MLLVLTVILIEAHDFLTSFVFSDWNIVRMLCSYDRPSRRWLQKIYSV-VIYIRSCLLSSS 502
Query: 142 R 140
+
Sbjct: 503 K 503
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,720,104
Number of Sequences: 37544
Number of extensions: 314594
Number of successful extensions: 824
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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