Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12c13
(749 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73910-2|CAA98138.1| 248|Caenorhabditis elegans Hypothetical pr... 54 1e-07
U05038-1|AAA61872.1| 248|Caenorhabditis elegans 14-3-3 protein ... 54 1e-07
Z66564-2|CAA91474.1| 248|Caenorhabditis elegans Hypothetical pr... 52 4e-07
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein. 29 2.7
AF070070-1|AAC70065.1| 933|Caenorhabditis elegans MutS homolog ... 29 2.7
Z81017-8|CAC70094.2| 988|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z81017-7|CAB02673.2| 1040|Caenorhabditis elegans Hypothetical pr... 28 6.2
U39761-1|AAC46934.1| 1040|Caenorhabditis elegans EGL-15 protein. 28 6.2
AY288941-1|AAP44084.1| 987|Caenorhabditis elegans EGL-15 protein. 28 6.2
>Z73910-2|CAA98138.1| 248|Caenorhabditis elegans Hypothetical
protein M117.2 protein.
Length = 248
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = -2
Query: 748 EESYKDSTLIXQLLRDNLTLWTSDMQGDGESADAEQK 638
E+SYKDSTLI QLLRDNLTLWTSD+ + + + Q+
Sbjct: 209 EDSYKDSTLIMQLLRDNLTLWTSDVGAEDQEQEGNQE 245
>U05038-1|AAA61872.1| 248|Caenorhabditis elegans 14-3-3 protein
protein.
Length = 248
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = -2
Query: 748 EESYKDSTLIXQLLRDNLTLWTSDMQGDGESADAEQK 638
E+SYKDSTLI QLLRDNLTLWTSD+ + + + Q+
Sbjct: 209 EDSYKDSTLIMQLLRDNLTLWTSDVGAEDQEQEGNQE 245
>Z66564-2|CAA91474.1| 248|Caenorhabditis elegans Hypothetical
protein F52D10.3a protein.
Length = 248
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = -2
Query: 748 EESYKDSTLIXQLLRDNLTLWTSDMQGDGESAD 650
E+SYKDSTLI QLLRDNLTLWTSD D A+
Sbjct: 210 EDSYKDSTLIMQLLRDNLTLWTSDAATDDTDAN 242
>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical
protein F09E8.3 protein.
Length = 1369
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -2
Query: 748 EESYKDSTLIXQLLRDNLTLWTSDMQGDGESADAEQKEPAQDGEDQD 608
E+ Y+D T D + W S + + AE++E +D +D D
Sbjct: 136 EKIYEDGTTEEGTSEDTVPTWDSSLAYSTDETTAEKEEKEEDEDDDD 182
>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
Length = 1369
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -2
Query: 748 EESYKDSTLIXQLLRDNLTLWTSDMQGDGESADAEQKEPAQDGEDQD 608
E+ Y+D T D + W S + + AE++E +D +D D
Sbjct: 136 EKIYEDGTTEEGTSEDTVPTWDSSLAYSTDETTAEKEEKEEDEDDDD 182
>AF070070-1|AAC70065.1| 933|Caenorhabditis elegans MutS homolog
protein.
Length = 933
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -2
Query: 748 EESYKDSTLIXQLLRDNLTLWTSDMQGDGESADAEQKEPAQDGEDQD 608
E+ Y+D T D + W S + + AE++E +D +D D
Sbjct: 136 EKIYEDGTTEEGTSEDTVPTWDSSLAYSTDETTAEKEEKEEDEDDDD 182
>Z81017-8|CAC70094.2| 988|Caenorhabditis elegans Hypothetical
protein F58A3.2b protein.
Length = 988
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 215 RTIGSRNVVLG*GYALEEVFIERAEDVRSNTFHRRRSG*R 96
R + +RNV++G G+ L+ + DV N ++R+R R
Sbjct: 744 RDLAARNVLVGDGHVLKISDFGLSRDVHCNDYYRKRGNGR 783
>Z81017-7|CAB02673.2| 1040|Caenorhabditis elegans Hypothetical
protein F58A3.2a protein.
Length = 1040
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 215 RTIGSRNVVLG*GYALEEVFIERAEDVRSNTFHRRRSG*R 96
R + +RNV++G G+ L+ + DV N ++R+R R
Sbjct: 796 RDLAARNVLVGDGHVLKISDFGLSRDVHCNDYYRKRGNGR 835
>U39761-1|AAC46934.1| 1040|Caenorhabditis elegans EGL-15 protein.
Length = 1040
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 215 RTIGSRNVVLG*GYALEEVFIERAEDVRSNTFHRRRSG*R 96
R + +RNV++G G+ L+ + DV N ++R+R R
Sbjct: 796 RDLAARNVLVGDGHVLKISDFGLSRDVHCNDYYRKRGNGR 835
>AY288941-1|AAP44084.1| 987|Caenorhabditis elegans EGL-15 protein.
Length = 987
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 215 RTIGSRNVVLG*GYALEEVFIERAEDVRSNTFHRRRSG*R 96
R + +RNV++G G+ L+ + DV N ++R+R R
Sbjct: 743 RDLAARNVLVGDGHVLKISDFGLSRDVHCNDYYRKRGNGR 782
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,952,422
Number of Sequences: 27780
Number of extensions: 258797
Number of successful extensions: 750
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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