Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c12
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    28   1.7  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.2  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    27   2.9  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    27   3.9  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    26   5.1  
SPBC216.06c |swi1||replication fork protection complex subunit S...    26   6.7  
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar...    25   8.9  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    25   8.9  

>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 14/106 (13%)
 Frame = +3

Query: 339 ASLNSNYFLLFAFQCRKYGHCLPSNDLITRFECL----PNFPTGIFR-------CTTGEV 485
           AS   + FLLF F+C      +   + ++ FE +     NFP G  +         T + 
Sbjct: 291 ASGQPHIFLLFTFECLYIFSLVIDQETLSSFELINQVPTNFPKGALQPDGFIPIYRTSKH 350

Query: 486 KLYKYTIIVFSRGFA---LLSLETNYILIAFFFYIKYTYVLFSVPL 614
           + Y Y II+F +  A   + SL T++    F   + Y +     P+
Sbjct: 351 EFYDYNIILFFQNSAREYMFSL-TDFFYSDFELRVSYDFYGHDYPI 395


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = +3

Query: 75  RNVSKYCSRRRSDDIIYNVGPFLNAYSSTTIVLNLNIRLLYNNKYIKCIIY------GII 236
           +  +KY + R  +  I N    L ++SS    +  N+R+ + N  I+CI         I+
Sbjct: 120 KGTTKYFNSRHFE--IKNAVENLPSFSSNLTTIGNNLRIFWKNGKIRCIKLTCTPDAEIV 177

Query: 237 NTTVNTRKCRHY 272
           N T N  + R Y
Sbjct: 178 NFTSNPNRYRFY 189


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
 Frame = +3

Query: 66  HTLRNVSKYCSRRRSDDIIYNVGPFLNAYSSTTIVLNLNIRLLY-----NNKYIKCIIYG 230
           H L +   Y SR R  ++   V   LN  +   I   L I  L      +NK +  I + 
Sbjct: 118 HDLYSEEMYSSRNRLSNMELEVLRALNFDTHIVIPHKLAIHYLQTLQLIDNKKLLQITWN 177

Query: 231 IINTTVNTRKCRHYGPF 281
            +N    TR C  Y PF
Sbjct: 178 FLNDASRTRLCVLYPPF 194


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 215 VYNLWYNKYYG 247
           VYNLWYNK+ G
Sbjct: 70  VYNLWYNKWSG 80


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 496 LYNFTSPVVHRNIPVGKLGRHSNRVMRSFEGKQWP 392
           +Y+F SP++      G+L  HSNR++   + K  P
Sbjct: 840 IYSFDSPLLDSVQVKGELISHSNRIITRSQSKLHP 874


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 20/89 (22%), Positives = 41/89 (46%)
 Frame = -3

Query: 550 FVSKLRRAKPREKTIIVYLYNFTSPVVHRNIPVGKLGRHSNRVMRSFEGKQWPYFRH*KA 371
           F+  +R +   +KT  +Y  +++  +         L  H+  ++ SFE KQW  F+    
Sbjct: 378 FLEFMRFSSKPKKTEEIYSNDYSFGLAASVFDQRALIMHNRLMVESFEMKQWSTFQASML 437

Query: 370 NNRK*LLFNEAVT*FSTQLTAAMT*NYLS 284
           +  + L    ++T  S+++   +  N LS
Sbjct: 438 SMTQLLFTLRSMTLCSSEIYQRIADNLLS 466


>SPAC6G9.03c |mug183||histone chaperone
           Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 393 HISDTEKQTIENNYYLMRQSHSSAHN 316
           H+    K  ++NN+ ++ +S SSA N
Sbjct: 102 HVPCPRKANVQNNFVIILKSESSAEN 127


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +3

Query: 96  SRRRSDDIIYNVGPFLNAYSSTTIVLNLNIRLL--YNNKYIKCIIYGIIN 239
           SRR     +++V PFL        VLN  + LL  Y + ++  I  G  N
Sbjct: 382 SRRHFSGELFSVSPFLARRLHNLFVLNERVALLGRYEHGFMSMIPVGATN 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,749
Number of Sequences: 5004
Number of extensions: 63661
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)