Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c12
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0132 + 14711645-14711839,14712641-14712970,14713689-147137...    28   9.3  
02_05_1040 - 33709588-33709880,33709960-33710200,33710498-337106...    28   9.3  

>03_03_0132 +
           14711645-14711839,14712641-14712970,14713689-14713751,
           14713833-14713906,14714004-14714099,14714705-14714759,
           14714867-14714971,14715054-14715135,14715450-14715562,
           14715717-14716118
          Length = 504

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 465 RCTTGEVKLYKYTIIVFSRGFALLSLETNYILIAFFFYIKYTYVLFSVPLANY 623
           +C  G  +   +      +GF  L L TN I++       YTYVLF +  A+Y
Sbjct: 51  KCGVGANRNQAFVEFTSRKGFQKLYLPTNSIIV-------YTYVLFVINAAHY 96


>02_05_1040 -
           33709588-33709880,33709960-33710200,33710498-33710672,
           33710781-33710892,33711906-33712145,33712253-33712436
          Length = 414

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 349 IVIIFYCLLFSVGNMATVYLQMIS*LGSNVFLIFQLV 459
           +VI+F  L+F V N    + + IS  GS +FL+ Q+V
Sbjct: 124 VVIVF--LMFFVPNGVVSFYESISKFGSGLFLLVQVV 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,990,924
Number of Sequences: 37544
Number of extensions: 317196
Number of successful extensions: 558
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)