Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c12
         (762 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67615-1|AAB41309.1| 3801|Homo sapiens beige protein homolog pro...    30   7.8  
AL390765-1|CAI14952.1| 3801|Homo sapiens lysosomal trafficking r...    30   7.8  
AL121997-1|CAI18987.1| 3801|Homo sapiens lysosomal trafficking r...    30   7.8  

>U67615-1|AAB41309.1| 3801|Homo sapiens beige protein homolog protein.
          Length = 3801

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +3

Query: 60   NFHTLRNVSKYCSRRRSDDIIYNVGPFLNA-YSSTTIVLNLNIRLLYNN 203
            NF  L +++K+  R  +D + Y V PF+ A Y S T  L+LN  L+Y N
Sbjct: 3142 NFEYLTHLNKHAGRSFNDLMQYPVFPFILADYVSET--LDLNDLLIYRN 3188


>AL390765-1|CAI14952.1| 3801|Homo sapiens lysosomal trafficking
            regulator protein.
          Length = 3801

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +3

Query: 60   NFHTLRNVSKYCSRRRSDDIIYNVGPFLNA-YSSTTIVLNLNIRLLYNN 203
            NF  L +++K+  R  +D + Y V PF+ A Y S T  L+LN  L+Y N
Sbjct: 3142 NFEYLTHLNKHAGRSFNDLMQYPVFPFILADYVSET--LDLNDLLIYRN 3188


>AL121997-1|CAI18987.1| 3801|Homo sapiens lysosomal trafficking
            regulator protein.
          Length = 3801

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +3

Query: 60   NFHTLRNVSKYCSRRRSDDIIYNVGPFLNA-YSSTTIVLNLNIRLLYNN 203
            NF  L +++K+  R  +D + Y V PF+ A Y S T  L+LN  L+Y N
Sbjct: 3142 NFEYLTHLNKHAGRSFNDLMQYPVFPFILADYVSET--LDLNDLLIYRN 3188


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,755,511
Number of Sequences: 237096
Number of extensions: 1947285
Number of successful extensions: 2317
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2317
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9144232952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)