Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12c12
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83114-1|CAB63234.1| 549|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z81051-7|CAB02868.1| 167|Caenorhabditis elegans Hypothetical pr... 30 2.1
U53154-8|AAC25846.1| 328|Caenorhabditis elegans Hypothetical pr... 29 2.7
AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol 1,4,... 29 4.8
AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol 1,4,... 29 4.8
AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol 1,4,... 29 4.8
AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol 1,4,... 29 4.8
AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol 1,4,... 29 4.8
AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol trip... 29 4.8
AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol trip... 29 4.8
AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol trip... 29 4.8
AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol trip... 29 4.8
AC024741-1|AAK68394.3| 789|Caenorhabditis elegans Hypothetical ... 29 4.8
AF026204-2|AAB71251.2| 247|Caenorhabditis elegans Hypothetical ... 28 8.3
>Z83114-1|CAB63234.1| 549|Caenorhabditis elegans Hypothetical
protein K09B11.2 protein.
Length = 549
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 666 CLFICLRINYSIDNYNLPEV 607
C F+CL N SI++YNLP V
Sbjct: 31 CSFLCLAGNASINDYNLPAV 50
>Z81051-7|CAB02868.1| 167|Caenorhabditis elegans Hypothetical
protein C55A6.8 protein.
Length = 167
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 111 DDIIYNVGPFLNAYSSTTIVLNLNIRLLYNNKYIKCIIYGIINTTVN 251
DD + VG + + +V N I YNNK + + Y + VN
Sbjct: 51 DDFVIKVGEIVGSEGLNLLVNNAGIITKYNNKSVHVLAYRMSKAAVN 97
>U53154-8|AAC25846.1| 328|Caenorhabditis elegans Hypothetical
protein C33G8.5 protein.
Length = 328
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 120 IYNVGPFLNAYSSTTIVLNLNIRLLYNNKYIKC 218
+YN G L A ST++V+ I L YN+ Y C
Sbjct: 101 LYNFGMALAAMCSTSLVIERAIALHYNSTYEMC 133
>AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2857
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 45 KVNNANFHTLRNVSKYCSRRRSDDIIYNVGPFLNAYSSTTIVLNLN 182
++ N+N H L+++S+ R+ DD+ GP + + T +N++
Sbjct: 2206 EMTNSNHHMLKSISRDLFRQAEDDLKKKSGPQITVNTVTLPEINVD 2251
>AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2836
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 45 KVNNANFHTLRNVSKYCSRRRSDDIIYNVGPFLNAYSSTTIVLNLN 182
++ N+N H L+++S+ R+ DD+ GP + + T +N++
Sbjct: 2185 EMTNSNHHMLKSISRDLFRQAEDDLKKKSGPQITVNTVTLPEINVD 2230
>AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2892
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 45 KVNNANFHTLRNVSKYCSRRRSDDIIYNVGPFLNAYSSTTIVLNLN 182
++ N+N H L+++S+ R+ DD+ GP + + T +N++
Sbjct: 2241 EMTNSNHHMLKSISRDLFRQAEDDLKKKSGPQITVNTVTLPEINVD 2286
>AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 45 KVNNANFHTLRNVSKYCSRRRSDDIIYNVGPFLNAYSSTTIVLNLN 182
++ N+N H L+++S+ R+ DD+ GP + + T +N++
Sbjct: 2195 EMTNSNHHMLKSISRDLFRQAEDDLKKKSGPQITVNTVTLPEINVD 2240
>AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 45 KVNNANFHTLRNVSKYCSRRRSDDIIYNVGPFLNAYSSTTIVLNLN 182
++ N+N H L+++S+ R+ DD+ GP + + T +N++
Sbjct: 2195 EMTNSNHHMLKSISRDLFRQAEDDLKKKSGPQITVNTVTLPEINVD 2240
>AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform e protein.
Length = 2857
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 45 KVNNANFHTLRNVSKYCSRRRSDDIIYNVGPFLNAYSSTTIVLNLN 182
++ N+N H L+++S+ R+ DD+ GP + + T +N++
Sbjct: 2206 EMTNSNHHMLKSISRDLFRQAEDDLKKKSGPQITVNTVTLPEINVD 2251
>AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform f protein.
Length = 2846
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 45 KVNNANFHTLRNVSKYCSRRRSDDIIYNVGPFLNAYSSTTIVLNLN 182
++ N+N H L+++S+ R+ DD+ GP + + T +N++
Sbjct: 2195 EMTNSNHHMLKSISRDLFRQAEDDLKKKSGPQITVNTVTLPEINVD 2240
>AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform d protein.
Length = 2836
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 45 KVNNANFHTLRNVSKYCSRRRSDDIIYNVGPFLNAYSSTTIVLNLN 182
++ N+N H L+++S+ R+ DD+ GP + + T +N++
Sbjct: 2185 EMTNSNHHMLKSISRDLFRQAEDDLKKKSGPQITVNTVTLPEINVD 2230
>AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform a protein.
Length = 2892
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 45 KVNNANFHTLRNVSKYCSRRRSDDIIYNVGPFLNAYSSTTIVLNLN 182
++ N+N H L+++S+ R+ DD+ GP + + T +N++
Sbjct: 2241 EMTNSNHHMLKSISRDLFRQAEDDLKKKSGPQITVNTVTLPEINVD 2286
>AC024741-1|AAK68394.3| 789|Caenorhabditis elegans Hypothetical
protein R05G9R.1 protein.
Length = 789
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 381 CRKYGHCLPSNDLITRFECLPNFPTGIFRCTTGEVKLYK 497
C++Y CL ++ R +C +PT +C++ + LYK
Sbjct: 647 CQRYDKCL-RKEVEMRIKCAQPYPTPYDKCSSQLLPLYK 684
>AF026204-2|AAB71251.2| 247|Caenorhabditis elegans Hypothetical
protein C30E1.6 protein.
Length = 247
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 402 LPSNDLITRFECLPNFPTGIFRCTTGE--VKLYKYTIIVFSRGFALLSLETNYILIAFFF 575
LP +++ +++ L + IF T + + +TI FS F++ +LI FFF
Sbjct: 83 LPEENIVVKYKPLKSKLVLIFLVMTLSFVMPILSFTIPNFSISFSIFLWAKLQVLIYFFF 142
Query: 576 YI 581
YI
Sbjct: 143 YI 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,284,493
Number of Sequences: 27780
Number of extensions: 346484
Number of successful extensions: 814
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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