Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c12
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    25   0.77 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    25   0.77 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    25   1.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.4  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
 Frame = +3

Query: 51  NNANFHTLRNVSKYCSRRRSDDIIYNVGPFLNAYSSTTI-----VLNLNIRLLYNNKYIK 215
           N   +   R  SK  SR R++         +++ S+ TI       N N     NN Y K
Sbjct: 51  NEREYRKYRETSKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNNNNYNK 110

Query: 216 CIIYGIIN 239
            + Y IIN
Sbjct: 111 KLYYNIIN 118


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
 Frame = +3

Query: 51  NNANFHTLRNVSKYCSRRRSDDIIYNVGPFLNAYSSTTI-----VLNLNIRLLYNNKYIK 215
           N   +   R  SK  SR R++         +++ S+ TI       N N     NN Y K
Sbjct: 51  NEREYRKYRETSKERSRDRAERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNNNNYNK 110

Query: 216 CIIYGIIN 239
            + Y IIN
Sbjct: 111 KLYYNIIN 118


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 165 IVLNLNIRLLYNNKYIKCIIYGIIN 239
           I+ +L+   ++NN Y K + Y IIN
Sbjct: 314 IISSLSNNTIHNNNYNKKLYYNIIN 338


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 511 TIIVYLYNFTSPVVHR 464
           TI V   NF SPV HR
Sbjct: 317 TIAVLNVNFRSPVTHR 332


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = -3

Query: 499 YLYNFTSPVVHRNIPVGKLGRHSNRVMRSFEGKQWPYFRH*KANNRK 359
           +L + +SP  HR++P+ +   H +     ++  Q PY  +   +  K
Sbjct: 54  HLMDLSSPPEHRDLPIYQSHHHLHHHQVLYQ--QSPYLMYENPDEEK 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,364
Number of Sequences: 438
Number of extensions: 5708
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)