Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c06
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    27   2.3  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   3.1  
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac...    26   5.4  
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    26   7.2  
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...    26   7.2  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.5  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   9.5  

>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/45 (24%), Positives = 28/45 (62%)
 Frame = -2

Query: 737 DIAQAVNLVSRKVENPTREDVTKLKKIFKYLVGTKHKGILFKRNK 603
           ++A  +++++ ++ NPT E +  +K + K L+   HK + + R++
Sbjct: 116 NLASEMDVINTRIVNPTGELLKIVKDVDKLLLKRDHKQLDYDRHR 160


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
 Frame = -2

Query: 752 TRTRPDIAQAVNLV----SRKVENPT------REDVTKLKKIFKYLVGTKHKGILFKRNK 603
           +RT P I + +++V    S  VENP           + +K+   + V  K K  LFK+NK
Sbjct: 66  SRTTPVIIKQISMVRSYSSGDVENPEILNKNESNQSSGVKRAMPFRVLKKMKSFLFKQNK 125

Query: 602 PI 597
           P+
Sbjct: 126 PL 127


>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = -2

Query: 455 TEAEYIAAADCCKEALYLKSLLQEITGMDIKINLHVDNQSSIQLVKSGSFNKRSKHIDVR 276
           T   +IA + C      L+S LQE+   +    LH+D   S+ L+    +  R K  D  
Sbjct: 215 TVIAFIAVSHCSVGHSELQSFLQELLTEEETTPLHLDITRSLSLLVRQGYLDRVKD-DTH 273

Query: 275 YHFIH 261
             F++
Sbjct: 274 NQFVY 278


>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 598 IGLFRLNKMPLCLVPTKYLN 657
           +GLFR++K+PL L  T + N
Sbjct: 292 LGLFRIHKLPLALPFTNHAN 311


>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 740 PDIAQAVNLVSRKVENPTREDVTKLKKIFK 651
           P +   +  +  ++E   RED T+LKK+ K
Sbjct: 180 PRLENTIKYIESELEELEREDFTRLKKVQK 209


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 689  TREDVTKLKKIFKYLVGTKHKGILFKRNKPIESIDAYSDSDYAGD 555
            T E +  LKK  +Y   T+   +    +   +S DAY DSD   D
Sbjct: 1247 TLECILFLKKFLQYQSNTEPPKVTVVGSTSHDSQDAYFDSDVLDD 1291


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -2

Query: 425  CCKEALYLKSLLQEITGMDIKINLHVDNQSS-IQLVKSGSFNKRSKHID 282
            CC+EA Y+K  + E +   IK+   +  +++ +QL+     +K +K ++
Sbjct: 914  CCEEATYIKQDMTEFSLQAIKLLKSISGKATLLQLMDIFRGSKSAKIVE 962


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,400,260
Number of Sequences: 5004
Number of extensions: 71953
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)