Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12c06
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0630 - 8354628-8355803,8355837-8355926 129 3e-30
04_03_0631 - 18190195-18190686,18190866-18191066 126 2e-29
02_05_0338 - 28084169-28084366,28084414-28085225,28085565-280855... 92 5e-19
09_02_0336 - 7397745-7398308,7398813-7400723 82 6e-16
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 79 5e-15
07_03_0346 - 17010472-17010843 67 2e-11
04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178 62 7e-10
03_02_0868 + 11937652-11937757,11938097-11938671 52 5e-07
10_05_0068 + 8774712-8774787,8774812-8774852,8774895-8775743,877... 48 9e-06
12_01_0723 - 6360652-6360753,6360898-6361239 43 3e-04
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 30 2.5
01_06_1486 - 37709159-37709377,37709558-37709821,37709903-377099... 29 4.3
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 29 5.7
01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-59... 28 9.9
>04_01_0630 - 8354628-8355803,8355837-8355926
Length = 421
Score = 129 bits (311), Expect = 3e-30
Identities = 71/213 (33%), Positives = 120/213 (56%), Gaps = 7/213 (3%)
Frame = -2
Query: 797 EYPYREAVGSLLYLSTRTRPDIAQAVNLVSRKVENPTREDVTKLKKIFKYLVGTKHKGIL 618
++PY A+G+L+YL+ TRPDIA +VNL++R PT+ T +K +F+YL GT+ G+
Sbjct: 179 DFPYLSAIGALMYLANSTRPDIAFSVNLLARYSAAPTKRHWTGVKNVFRYLNGTRDLGLF 238
Query: 617 FKRNKPIESIDAYSDSDYAGDPLTRRSTSGSVLMIADGPISWASKRQPIVALSSTEAEYI 438
FK+N+ ++ Y+D+ Y DP RS +G V + ISW S +Q +VA S+ +E I
Sbjct: 239 FKKNQG-STLIGYTDAGYLSDPHNARSQTGFVFLQGGTAISWKSSKQTLVATSTNHSEII 297
Query: 437 AAADCCKEALYLKSLLQEIT------GMDIKINLHVDNQSSIQLVKSGSFNKR-SKHIDV 279
A + +E ++L+ ++ I ++ ++ DN + + +++G +KHI
Sbjct: 298 ALYEASRECVWLRRMVNHILTSCGIGSLESPTFIYEDNAACVVQMETGYIKSNITKHIAP 357
Query: 278 RYHFIHEHFVHGLINISYCPTEIQLADVMTKPL 180
+ + HE HG INI + L+D+ TK L
Sbjct: 358 KLFYPHELQQHGEINILQTKSCDNLSDLFTKSL 390
>04_03_0631 - 18190195-18190686,18190866-18191066
Length = 230
Score = 126 bits (305), Expect = 2e-29
Identities = 59/139 (42%), Positives = 91/139 (65%)
Frame = -2
Query: 581 YSDSDYAGDPLTRRSTSGSVLMIADGPISWASKRQPIVALSSTEAEYIAAADCCKEALYL 402
YSDSDYAG + R+ST+G+ + +SW+ K+Q +ALS+ EAEY+AA CC + L++
Sbjct: 76 YSDSDYAGCKVDRKSTTGTCQFLGRSLVSWSFKKQNSIALSTAEAEYVAAGSCCAQLLWM 135
Query: 401 KSLLQEITGMDIKINLHVDNQSSIQLVKSGSFNKRSKHIDVRYHFIHEHFVHGLINISYC 222
K L+ KI L DN+S+I++ + + R+KHID+R+HF+ +H G I +++
Sbjct: 136 KQTLKVFGYNFTKIPLLCDNESAIKIANNPVQHSRTKHIDIRHHFLRDHETKGDICLTHV 195
Query: 221 PTEIQLADVMTKPLSKVKF 165
TE QLAD+ TKPL + +F
Sbjct: 196 RTESQLADIFTKPLDEKRF 214
>02_05_0338 - 28084169-28084366,28084414-28085225,28085565-28085595,
28085638-28086214,28086439-28087145,28087188-28087228,
28087253-28087366,28087517-28088108
Length = 1023
Score = 91.9 bits (218), Expect = 5e-19
Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 3/157 (1%)
Frame = -2
Query: 788 YREAVGSLLYLSTRTRPDIAQAVNLVSRKVENPTREDVTKLKKIFKYLVGTKHKGILFKR 609
Y + +GSL+YL++ TRPDI+ AV+ +SR NP + L+++ +YL GT G+ +
Sbjct: 807 YSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTG 866
Query: 608 NKPIESIDAYSDSDYAGDPLTRRSTSGSVLMIADGPISWASKRQPIVALSSTEAEYIAAA 429
+ ++ YSDS++ D ++TSG V + G +SW S +Q I+ S+ EAE A
Sbjct: 867 YPAV--LEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALD 924
Query: 428 DCCKEALYLKSLLQEITGMD---IKINLHVDNQSSIQ 327
EA +L+ LL ++ ++ I ++ DNQ++ +
Sbjct: 925 TATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTTCE 961
>09_02_0336 - 7397745-7398308,7398813-7400723
Length = 824
Score = 81.8 bits (193), Expect = 6e-16
Identities = 46/107 (42%), Positives = 61/107 (57%)
Frame = -2
Query: 800 KEYPYREAVGSLLYLSTRTRPDIAQAVNLVSRKVENPTREDVTKLKKIFKYLVGTKHKGI 621
K PY AVGSL Y TRPD+A L+ R NP E +KK+ YL GTK +
Sbjct: 721 KTKPYASAVGSLQYAQVCTRPDLAFVTGLLGRFQSNPGLEHWKLIKKVLHYLQGTKGLML 780
Query: 620 LFKRNKPIESIDAYSDSDYAGDPLTRRSTSGSVLMIADGPISWASKR 480
++R++ ++ I YSDSD+A D +STSG V +A G ISW S +
Sbjct: 781 SYRRSESLQ-IVGYSDSDFAKD--NTKSTSGYVFTLAGGAISWKSSK 824
>01_05_0320 - 20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 78.6 bits (185), Expect = 5e-15
Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 4/169 (2%)
Frame = -2
Query: 668 LKKIFKYLVGTKHKGILFKRNKPIESIDAYSDSDYAGDPLTRRSTSGSVLMIADGPISWA 489
L+++ +YL GT GI + + ++ YSDS++ D ++TSG + G +SW
Sbjct: 803 LERVMRYLKGTMSYGIHYTGYPKV--LEGYSDSNWISDADEIKATSGYAFTLGGGAVSWK 860
Query: 488 SKRQPIVALSSTEAEYIAAADCCKEALYLKSLLQEITGMD---IKINLHVDNQSSIQLVK 318
S +Q I+ S+ EAE A EA +L+ LL ++ ++ I ++ DNQ+ I V
Sbjct: 861 SCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQTVIIKVN 920
Query: 317 SGSFN-KRSKHIDVRYHFIHEHFVHGLINISYCPTEIQLADVMTKPLSK 174
S N K S+HI R +H G+I + Y T LAD TK L +
Sbjct: 921 SSKDNMKSSRHIKRRLKSVHS----GVIALDYVQTARNLADQFTKGLPR 965
>07_03_0346 - 17010472-17010843
Length = 123
Score = 66.9 bits (156), Expect = 2e-11
Identities = 36/87 (41%), Positives = 54/87 (62%)
Frame = -2
Query: 788 YREAVGSLLYLSTRTRPDIAQAVNLVSRKVENPTREDVTKLKKIFKYLVGTKHKGILFKR 609
YR G+L YL T TRP++A AV V + +P + +K+I +Y+ G+ G+
Sbjct: 31 YRSLAGALQYL-TLTRPELAYAVQQVCLFMHDPREPHLALVKRILRYVKGSLSAGLHIGT 89
Query: 608 NKPIESIDAYSDSDYAGDPLTRRSTSG 528
P++S+ AYSD+D+AG P +RRSTSG
Sbjct: 90 G-PVKSLTAYSDADWAGCPDSRRSTSG 115
>04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178
Length = 455
Score = 61.7 bits (143), Expect = 7e-10
Identities = 36/91 (39%), Positives = 52/91 (57%)
Frame = -2
Query: 791 PYREAVGSLLYLSTRTRPDIAQAVNLVSRKVENPTREDVTKLKKIFKYLVGTKHKGILFK 612
PY AVGSL+Y +RPD++ A++LVSR + NP +E ++ F+YL GT F
Sbjct: 317 PYSSAVGSLMYAMICSRPDLSHAMSLVSRYMANPGKEHWKAVQWFFRYLRGTTDACSKFG 376
Query: 611 RNKPIESIDAYSDSDYAGDPLTRRSTSGSVL 519
R + + Y DSD+A + RRS + VL
Sbjct: 377 RTD--KGLVGYVDSDFAANLDKRRSFTVKVL 405
>03_02_0868 + 11937652-11937757,11938097-11938671
Length = 226
Score = 52.0 bits (119), Expect = 5e-07
Identities = 26/74 (35%), Positives = 45/74 (60%)
Frame = -2
Query: 788 YREAVGSLLYLSTRTRPDIAQAVNLVSRKVENPTREDVTKLKKIFKYLVGTKHKGILFKR 609
Y + +GSL+YL++ TRPDI+ AV+ +SR NP + L+++ +YL GT + +
Sbjct: 155 YSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTIELRLHYSG 214
Query: 608 NKPIESIDAYSDSD 567
+ ++ YSDS+
Sbjct: 215 YPTV--LEGYSDSN 226
>10_05_0068 +
8774712-8774787,8774812-8774852,8774895-8775743,
8776210-8776582,8776814-8777484
Length = 669
Score = 48.0 bits (109), Expect = 9e-06
Identities = 22/56 (39%), Positives = 36/56 (64%)
Frame = -2
Query: 788 YREAVGSLLYLSTRTRPDIAQAVNLVSRKVENPTREDVTKLKKIFKYLVGTKHKGI 621
Y + +GSL+YL++ TR DI+ AV+ +SR NP + L+++ +YL GT G+
Sbjct: 566 YSQIIGSLMYLASATRLDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTMELGL 621
>12_01_0723 - 6360652-6360753,6360898-6361239
Length = 147
Score = 42.7 bits (96), Expect = 3e-04
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Frame = -2
Query: 452 EAEYIAAADCCKEALYLKSLLQEITGMDIKIN---LHVDNQSSIQLVKSGSFN-KRSKHI 285
EAE A EA +L+ LL ++ ++ + ++ DNQ+ I V S N K S+H+
Sbjct: 2 EAELTALDTATVEAKWLRELLMDLPVVEKPVPAILMNCDNQTVIIKVNSSKDNMKSSRHV 61
Query: 284 DVRYHFIHEHFVHGLINISYCPTEIQLADVMTKPLSK 174
R ++ + G+I + Y T LAD TK L +
Sbjct: 62 KRRLKYVRKQKNSGVIALDYVQTARNLADQFTKGLPR 98
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 461 SSTEAEYIAAADCCKEALYLKSLLQEITGMDIKINLHVDNQSSIQLVKS 315
+S+E I + CC LYL L+QE+ I I L + S + + S
Sbjct: 2051 TSSEENIILSQPCCDNVLYLLKLIQELLFNQIGIKLLFPSNPSEESLSS 2099
>01_06_1486 -
37709159-37709377,37709558-37709821,37709903-37709995,
37710387-37710581,37710665-37710763,37710884-37711132,
37711264-37711467,37711543-37711602,37711731-37711913,
37712382-37712999,37713101-37713169,37713275-37713853
Length = 943
Score = 29.1 bits (62), Expect = 4.3
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Frame = -2
Query: 623 ILFKRNKPIESIDAYS-DSDYAGDPLTRRSTSGSVLMIADGPISWASKRQPIVALSSTEA 447
+L +R+K +D + D+ G + RS GS L++AD SK + I+ L+S E
Sbjct: 443 VLAERDKEEMEMDIGKLEFDFMGTSVICRS--GSPLILADLKKVSVSKARAIIVLASDEN 500
Query: 446 EYIAAADCCKEALYLKSLLQEITGMDIKINLHVDNQSSIQLV 321
+ A + L L + + + G + +DN+ ++LV
Sbjct: 501 ADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLV 542
>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -1
Query: 162 KTLCKINAC-IETCLGNMSEHQEKVLEGRDAVHV 64
K++C+ A +E+C+ +S+ +++LE D VH+
Sbjct: 1465 KSICQELASELESCMAQLSQKDDELLEAEDKVHL 1498
>01_01_0078 +
587975-588179,588506-588606,589087-589167,589240-590178,
590388-590542,590837-590902,590963-591023,591659-591853,
591939-592049,592116-592280
Length = 692
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +2
Query: 107 SLMLPRHVSIHALILHSVFQILLLTMVLSLRQLTEFLWDSS*YLLIH 247
SL++ +H+ H L++HS+ +L+ +++ ++ SS L+H
Sbjct: 454 SLLVCKHMLKHKLVIHSISVHILVEFIIARINFEIMIYGSSTMELVH 500
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,441,232
Number of Sequences: 37544
Number of extensions: 444054
Number of successful extensions: 1144
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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