Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c06
         (801 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC037982-1|AAH37982.1|  685|Homo sapiens leucine rich repeat con...    32   2.1  
AK000163-1|BAA90984.1|  685|Homo sapiens protein ( Homo sapiens ...    31   3.7  
BX640881-1|CAE45937.1|  999|Homo sapiens hypothetical protein pr...    30   8.5  
BC110332-1|AAI10333.1|  412|Homo sapiens ZNF507 protein protein.       30   8.5  

>BC037982-1|AAH37982.1|  685|Homo sapiens leucine rich repeat
           containing 49 protein.
          Length = 685

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = +1

Query: 31  TNLNIVQHRQLY----VDSITTFQHLLLMFTHVAETRFYTCINLAQCLSNFTFD 180
           T LN+ +H Q+     VD++   QHL L F +++     +C+  +  LS+ TFD
Sbjct: 225 TELNL-RHNQITFVRDVDNLPCLQHLFLSFNNISSFDSVSCLADSSSLSDITFD 277


>AK000163-1|BAA90984.1|  685|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20156 fis, clone COL08823. ).
          Length = 685

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = +1

Query: 31  TNLNIVQHRQLY----VDSITTFQHLLLMFTHVAETRFYTCINLAQCLSNFTFD 180
           T LN+ +H Q+     VD++   QHL L F +++     +C+  +  LS+ TFD
Sbjct: 225 TELNL-RHNQITFVRDVDNLPCLQHLFLSFNNISSFDSVSCLADSSSLSDTTFD 277


>BX640881-1|CAE45937.1|  999|Homo sapiens hypothetical protein
            protein.
          Length = 999

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 23/93 (24%), Positives = 41/93 (44%)
 Frame = -1

Query: 708  QEGRKPH*RRRYKIEENIQIFSGNQT*RHFIQTKQTDREHRCLQRLGLCWRPIDAKKHFW 529
            QEG K   +++Y+ +      +     R+  +   +D+ +RC     +C  P   K H W
Sbjct: 793  QEGNKSSVQKQYRCDVCDYTSTTYVGVRNHRRIHNSDKPYRCSLCGYVCSHPPSLKSHMW 852

Query: 528  FRANDSRWTNIMGIQEAAYSSAIVDRSRVHSRS 430
              A+D  + N   + + A + AI    RV  +S
Sbjct: 853  KHASDQNY-NYEQVNK-AINDAISQSGRVLGKS 883


>BC110332-1|AAI10333.1|  412|Homo sapiens ZNF507 protein protein.
          Length = 412

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 23/93 (24%), Positives = 41/93 (44%)
 Frame = -1

Query: 708 QEGRKPH*RRRYKIEENIQIFSGNQT*RHFIQTKQTDREHRCLQRLGLCWRPIDAKKHFW 529
           QEG K   +++Y+ +      +     R+  +   +D+ +RC     +C  P   K H W
Sbjct: 206 QEGNKSSVQKQYRCDVCDYTSTTYVGVRNHRRIHNSDKPYRCSLCGYVCSHPPSLKSHMW 265

Query: 528 FRANDSRWTNIMGIQEAAYSSAIVDRSRVHSRS 430
             A+D  + N   + + A + AI    RV  +S
Sbjct: 266 KHASDQNY-NYEQVNK-AINDAISQSGRVLGKS 296


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,107,826
Number of Sequences: 237096
Number of extensions: 2502347
Number of successful extensions: 4623
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4623
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)