Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c06
         (801 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X04456-2|CAD27357.1| 1017|Drosophila melanogaster hypothetical p...   169   3e-42
X04456-1|CAA28054.2| 1409|Drosophila melanogaster hypothetical p...   169   3e-42
X02599-1|CAA26444.1| 1409|Drosophila melanogaster 31 KD polyprot...   169   3e-42
BT011428-1|AAR99086.1| 1409|Drosophila melanogaster SD14423p pro...   169   3e-42
AY119276-1|AAM51136.1|  714|Drosophila melanogaster SD26211p pro...   159   5e-39
AF492763-1|AAM11672.1|  415|Drosophila melanogaster polyprotein ...   153   4e-37
X07656-2|CAA30503.1|  982|Drosophila melanogaster protein ( Dros...   130   2e-30
X02600-2|CAA26446.1|  146|Drosophila melanogaster protein ( Dros...   109   4e-24
X02600-1|CAA26447.1| 1288|Drosophila melanogaster protein ( Dros...    66   4e-11
AY051834-1|AAK93258.1|  430|Drosophila melanogaster LD33778p pro...    30   4.2  
AE014297-2415|AAF55474.2|  430|Drosophila melanogaster CG7357-PA...    30   4.2  

>X04456-2|CAD27357.1| 1017|Drosophila melanogaster hypothetical
            protein protein.
          Length = 1017

 Score =  169 bits (412), Expect = 3e-42
 Identities = 90/212 (42%), Positives = 129/212 (60%), Gaps = 3/212 (1%)
 Frame = -2

Query: 791  PYREAVGSLLYLSTRTRPDIAQAVNLVSRKVENPTREDVTKLKKIFKYLVGTKHKGILFK 612
            P R  +G L+Y+   TRPD+  AVN++SR       E    LK++ +YL GT    ++FK
Sbjct: 788  PCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFK 847

Query: 611  RNKPIES-IDAYSDSDYAGDPLTRRSTSGSVLMIAD-GPISWASKRQPIVALSSTEAEYI 438
            +N   E+ I  Y DSD+AG  + R+ST+G +  + D   I W +KRQ  VA SSTEAEY+
Sbjct: 848  KNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYM 907

Query: 437  AAADCCKEALYLKSLLQEIT-GMDIKINLHVDNQSSIQLVKSGSFNKRSKHIDVRYHFIH 261
            A  +  +EAL+LK LL  I   ++  I ++ DNQ  I +  + S +KR+KHID++YHF  
Sbjct: 908  ALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAR 967

Query: 260  EHFVHGLINISYCPTEIQLADVMTKPLSKVKF 165
            E   + +I + Y PTE QLAD+ TKPL   +F
Sbjct: 968  EQVQNNVICLEYIPTENQLADIFTKPLPAARF 999


>X04456-1|CAA28054.2| 1409|Drosophila melanogaster hypothetical
            protein protein.
          Length = 1409

 Score =  169 bits (412), Expect = 3e-42
 Identities = 90/212 (42%), Positives = 129/212 (60%), Gaps = 3/212 (1%)
 Frame = -2

Query: 791  PYREAVGSLLYLSTRTRPDIAQAVNLVSRKVENPTREDVTKLKKIFKYLVGTKHKGILFK 612
            P R  +G L+Y+   TRPD+  AVN++SR       E    LK++ +YL GT    ++FK
Sbjct: 1180 PCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFK 1239

Query: 611  RNKPIES-IDAYSDSDYAGDPLTRRSTSGSVLMIAD-GPISWASKRQPIVALSSTEAEYI 438
            +N   E+ I  Y DSD+AG  + R+ST+G +  + D   I W +KRQ  VA SSTEAEY+
Sbjct: 1240 KNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYM 1299

Query: 437  AAADCCKEALYLKSLLQEIT-GMDIKINLHVDNQSSIQLVKSGSFNKRSKHIDVRYHFIH 261
            A  +  +EAL+LK LL  I   ++  I ++ DNQ  I +  + S +KR+KHID++YHF  
Sbjct: 1300 ALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAR 1359

Query: 260  EHFVHGLINISYCPTEIQLADVMTKPLSKVKF 165
            E   + +I + Y PTE QLAD+ TKPL   +F
Sbjct: 1360 EQVQNNVICLEYIPTENQLADIFTKPLPAARF 1391


>X02599-1|CAA26444.1| 1409|Drosophila melanogaster 31 KD polyprotein
            protein.
          Length = 1409

 Score =  169 bits (412), Expect = 3e-42
 Identities = 90/212 (42%), Positives = 129/212 (60%), Gaps = 3/212 (1%)
 Frame = -2

Query: 791  PYREAVGSLLYLSTRTRPDIAQAVNLVSRKVENPTREDVTKLKKIFKYLVGTKHKGILFK 612
            P R  +G L+Y+   TRPD+  AVN++SR       E    LK++ +YL GT    ++FK
Sbjct: 1180 PCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFK 1239

Query: 611  RNKPIES-IDAYSDSDYAGDPLTRRSTSGSVLMIAD-GPISWASKRQPIVALSSTEAEYI 438
            +N   E+ I  Y DSD+AG  + R+ST+G +  + D   I W +KRQ  VA SSTEAEY+
Sbjct: 1240 KNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYM 1299

Query: 437  AAADCCKEALYLKSLLQEIT-GMDIKINLHVDNQSSIQLVKSGSFNKRSKHIDVRYHFIH 261
            A  +  +EAL+LK LL  I   ++  I ++ DNQ  I +  + S +KR+KHID++YHF  
Sbjct: 1300 ALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAR 1359

Query: 260  EHFVHGLINISYCPTEIQLADVMTKPLSKVKF 165
            E   + +I + Y PTE QLAD+ TKPL   +F
Sbjct: 1360 EQVQNNVICLEYIPTENQLADIFTKPLPAARF 1391


>BT011428-1|AAR99086.1| 1409|Drosophila melanogaster SD14423p protein.
          Length = 1409

 Score =  169 bits (412), Expect = 3e-42
 Identities = 90/212 (42%), Positives = 129/212 (60%), Gaps = 3/212 (1%)
 Frame = -2

Query: 791  PYREAVGSLLYLSTRTRPDIAQAVNLVSRKVENPTREDVTKLKKIFKYLVGTKHKGILFK 612
            P R  +G L+Y+   TRPD+  AVN++SR       E    LK++ +YL GT    ++FK
Sbjct: 1180 PCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFK 1239

Query: 611  RNKPIES-IDAYSDSDYAGDPLTRRSTSGSVLMIAD-GPISWASKRQPIVALSSTEAEYI 438
            +N   E+ I  Y DSD+AG  + R+ST+G +  + D   I W +KRQ  VA SSTEAEY+
Sbjct: 1240 KNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYM 1299

Query: 437  AAADCCKEALYLKSLLQEIT-GMDIKINLHVDNQSSIQLVKSGSFNKRSKHIDVRYHFIH 261
            A  +  +EAL+LK LL  I   ++  I ++ DNQ  I +  + S +KR+KHID++YHF  
Sbjct: 1300 ALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAR 1359

Query: 260  EHFVHGLINISYCPTEIQLADVMTKPLSKVKF 165
            E   + +I + Y PTE QLAD+ TKPL   +F
Sbjct: 1360 EQVQNNVICLEYIPTENQLADIFTKPLPAARF 1391


>AY119276-1|AAM51136.1|  714|Drosophila melanogaster SD26211p protein.
          Length = 714

 Score =  159 bits (385), Expect = 5e-39
 Identities = 83/209 (39%), Positives = 127/209 (60%), Gaps = 2/209 (0%)
 Frame = -2

Query: 788  YREAVGSLLYLSTRTRPDIAQAVNLVSRKVENPTREDVTKLKKIFKYLVGTKHKGILFKR 609
            Y+  +G L++L   TRPDI  +V  ++++ ++P  E +  +K I +YL  T    + ++ 
Sbjct: 497  YQSTIGELMWLGLTTRPDILHSVAKLAQRNKDPHSEHMVAVKHILRYLASTVDVKLHYQ- 555

Query: 608  NKPIESIDAYSDSDYAGDPLTRRSTSGSVLMIADGPISWASKRQPIVALSSTEAEYIAAA 429
             K  ++   + D+D+ GD L R+S +G V  ++ GP+SW S++Q  VALSSTEAEY+A  
Sbjct: 556  -KCGQAFTGFVDADWGGDRLDRKSYTGYVFFLSGGPVSWRSEKQQSVALSSTEAEYMALT 614

Query: 428  DCCKEALYLKSLLQEITGMDIKIN--LHVDNQSSIQLVKSGSFNKRSKHIDVRYHFIHEH 255
              CKEA+ L+ L+ EI   D+K    +H DN S+  L K+   + R+KHID+RYHFI E 
Sbjct: 615  TACKEAIALRRLIVEIGCGDLKTPTVMHGDNLSAQHLAKNPVHHSRTKHIDIRYHFIREV 674

Query: 254  FVHGLINISYCPTEIQLADVMTKPLSKVK 168
               G + + Y  T   +AD+MTK LSK K
Sbjct: 675  MKEGHVVLEYTSTNEMIADIMTKNLSKGK 703


>AF492763-1|AAM11672.1|  415|Drosophila melanogaster polyprotein
           protein.
          Length = 415

 Score =  153 bits (370), Expect = 4e-37
 Identities = 79/210 (37%), Positives = 127/210 (60%), Gaps = 1/210 (0%)
 Frame = -2

Query: 788 YREAVGSLLYLSTRTRPDIAQAVNLVSRKVENPTREDVTKLKKIFKYLVGTKHKGILFKR 609
           ++  +GSL+YL+  +RPDI  +V+ +S++  +P  ED    K + +YL GT +  I++ +
Sbjct: 200 FQSLIGSLMYLAVVSRPDILHSVSKLSQRNTDPHHEDEAAAKHVLRYLCGTINLSIIYMK 259

Query: 608 NKPIESIDAYSDSDYAGDPLTRRSTSGSVLMIADGPISWASKRQPIVALSSTEAEYIAAA 429
               E +  ++D+D+A D + R+S SG   ++A    SW S +Q ++A SSTEAEYIA +
Sbjct: 260 TG--ELVKEFADADWANDKVDRKSYSGYAFLMAGSAFSWGSSKQSVIAQSSTEAEYIALS 317

Query: 428 DCCKEALYLKSLLQEITGMDI-KINLHVDNQSSIQLVKSGSFNKRSKHIDVRYHFIHEHF 252
              KEA++L+ LLQE+   D   + L  DN S+  + K+   +KR+KHIDVRYHFI +  
Sbjct: 318 TAAKEAVFLRRLLQEMGWFDKGPLKLLCDNLSASSIAKNPINHKRTKHIDVRYHFIRDKV 377

Query: 251 VHGLINISYCPTEIQLADVMTKPLSKVKFE 162
               I + Y  T+  +AD++TK  +   FE
Sbjct: 378 NKNEIIVEYVNTQNNVADILTKAKALWLFE 407


>X07656-2|CAA30503.1|  982|Drosophila melanogaster protein (
            Drosophila melanogasterretrotransposon 1731 sequence. ).
          Length = 982

 Score =  130 bits (314), Expect = 2e-30
 Identities = 67/176 (38%), Positives = 109/176 (61%), Gaps = 3/176 (1%)
 Frame = -2

Query: 788  YREAVGSLLYLSTRTRPDIAQAVNLVSRKVENPTREDVTKLKKIFKYLVGTKHKGILFKR 609
            Y+  +G L++L   TRPD+  +V  ++++ ++P  E +  +K I +YL  T    + ++ 
Sbjct: 809  YQSTIGELMWLGLTTRPDMLHSVAKLAQRNQDPHSEHMVAVKHILRYLASTVDVKLHYQ- 867

Query: 608  NKPIESIDAYSDSDYAGDPLTRRSTSGSVLMIADGPISWASKRQPIVALSSTEAEYIAAA 429
             K  ++   + D+D+ GD L R+S +G V  ++ GP+SW S++Q  VALSSTEAEY+A  
Sbjct: 868  -KCGQAFTGFVDADWGGDRLDRKSYTGYVFFLSGGPVSWRSEKQQSVALSSTEAEYMALT 926

Query: 428  DCCKEALYLKSLLQEITGMDIKIN--LHVDN-QSSIQLVKSGSFNKRSKHIDVRYH 270
              CKEA+ L+ L+ EI   D+K    +H DN + + QL K+   + R+KHID+RYH
Sbjct: 927  TACKEAIALRRLIVEIVCGDLKTPTVMHGDNLKCAAQLAKNPVHHSRTKHIDIRYH 982


>X02600-2|CAA26446.1|  146|Drosophila melanogaster protein (
           Drosophila melanogastervirus like particle RNA (VLP
           H-RNA). ).
          Length = 146

 Score =  109 bits (262), Expect = 4e-24
 Identities = 57/128 (44%), Positives = 81/128 (63%), Gaps = 2/128 (1%)
 Frame = -2

Query: 542 RSTSGSVLMIAD-GPISWASKRQPIVALSSTEAEYIAAADCCKEALYLKSLLQEIT-GMD 369
           +ST+G +  + D   I W +KRQ  VA SSTEAEY+A  +  +EAL+LK LL  I   ++
Sbjct: 1   KSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLE 60

Query: 368 IKINLHVDNQSSIQLVKSGSFNKRSKHIDVRYHFIHEHFVHGLINISYCPTEIQLADVMT 189
             I ++ DNQ  I +  + S +KR+KHID++YHF  E   + +I + Y PTE QLAD+ T
Sbjct: 61  NPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFT 120

Query: 188 KPLSKVKF 165
           KPL   +F
Sbjct: 121 KPLPAARF 128


>X02600-1|CAA26447.1| 1288|Drosophila melanogaster protein (
            Drosophila melanogastervirus like particle RNA (VLP
            H-RNA). ).
          Length = 1288

 Score = 66.5 bits (155), Expect = 4e-11
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
 Frame = -2

Query: 791  PYREAVGSLLYLSTRTRPDIAQAVNLVSRKVENPTREDVTKLKKIFKYLVGTKHKGILFK 612
            P R  +G L+Y+   TRPD+  AVN++SR       E    LK++ +YL GT    ++FK
Sbjct: 1180 PCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFK 1239

Query: 611  RNKPIES-IDAYSDSDYAGDPLTRRSTSG 528
            +N   E+ I  Y DSD+AG  + R+   G
Sbjct: 1240 KNLAFENKIIGYVDSDWAGSEIDRKVQQG 1268


>AY051834-1|AAK93258.1|  430|Drosophila melanogaster LD33778p
           protein.
          Length = 430

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +2

Query: 488 MPMILVHRLSLARNQK---CFFASMGLQHNPSRCKH 586
           MP++ +H     + +K   C F  MG  ++PSRC+H
Sbjct: 246 MPLLRLHIRVHHKGEKPYVCKFCGMGFANSPSRCRH 281


>AE014297-2415|AAF55474.2|  430|Drosophila melanogaster CG7357-PA
           protein.
          Length = 430

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +2

Query: 488 MPMILVHRLSLARNQK---CFFASMGLQHNPSRCKH 586
           MP++ +H     + +K   C F  MG  ++PSRC+H
Sbjct: 246 MPLLRLHIRVHHKGEKPYVCKFCGMGFANSPSRCRH 281


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,225,078
Number of Sequences: 53049
Number of extensions: 784909
Number of successful extensions: 2063
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2043
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)