Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12c06
(801 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81093-2|CAB03146.1| 545|Caenorhabditis elegans Hypothetical pr... 31 0.73
Z81568-11|CAB04593.1| 681|Caenorhabditis elegans Hypothetical p... 31 1.3
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p... 31 1.3
U80436-4|AAC71111.1| 552|Caenorhabditis elegans Uncoordinated p... 31 1.3
U80436-3|AAL06029.3| 633|Caenorhabditis elegans Uncoordinated p... 31 1.3
U80436-2|AAC71110.1| 928|Caenorhabditis elegans Uncoordinated p... 31 1.3
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p... 31 1.3
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle... 31 1.3
Z95559-3|CAB08998.1| 786|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 3.9
U58755-1|AAB00691.3| 403|Caenorhabditis elegans Nematode astaci... 29 5.1
>Z81093-2|CAB03146.1| 545|Caenorhabditis elegans Hypothetical
protein F58D2.1 protein.
Length = 545
Score = 31.5 bits (68), Expect = 0.73
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -2
Query: 341 QSSIQLVKSGSFNKRSKHIDVR-YHFIHEHFVHGLINISYCP 219
Q + +K+GS+NKR+ +D + + ++ HF+ G + S+ P
Sbjct: 11 QKIAEFIKNGSYNKRAFELDPKSSNIVYSHFMKGDVPFSWKP 52
>Z81568-11|CAB04593.1| 681|Caenorhabditis elegans Hypothetical
protein K08E3.6 protein.
Length = 681
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/54 (24%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = -2
Query: 407 YLKSLLQEITGMDIKINLHVDNQSSIQ-LVKSGSFNKRSKHIDVRYHFIHEHFV 249
+L++L++E + + +N++ + ++ +K+G FN +K ++ F+HE V
Sbjct: 92 HLRALMEENKALKLDLNVYETREKQLKDAMKNGIFNSLTKEDRDQFKFLHEPLV 145
>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
protein 73, isoform f protein.
Length = 2140
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -2
Query: 620 LFKRNKPIESIDAYSDSDYAGDPLTRRSTSGSVLMIADGPISWASKRQPIVALSSTE 450
+F + + A S S P TR+STS S + A+G + +S PI LSS E
Sbjct: 1663 IFANSSKERAAAANSSSSNNNSPATRQSTSTSSPVTANGHTTESSTSAPIGVLSSGE 1719
>U80436-4|AAC71111.1| 552|Caenorhabditis elegans Uncoordinated
protein 73, isoform d protein.
Length = 552
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -2
Query: 620 LFKRNKPIESIDAYSDSDYAGDPLTRRSTSGSVLMIADGPISWASKRQPIVALSSTE 450
+F + + A S S P TR+STS S + A+G + +S PI LSS E
Sbjct: 17 IFANSSKERAAAANSSSSNNNSPATRQSTSTSSPVTANGHTTESSTSAPIGVLSSGE 73
>U80436-3|AAL06029.3| 633|Caenorhabditis elegans Uncoordinated
protein 73, isoform e protein.
Length = 633
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -2
Query: 620 LFKRNKPIESIDAYSDSDYAGDPLTRRSTSGSVLMIADGPISWASKRQPIVALSSTE 450
+F + + A S S P TR+STS S + A+G + +S PI LSS E
Sbjct: 98 IFANSSKERAAAANSSSSNNNSPATRQSTSTSSPVTANGHTTESSTSAPIGVLSSGE 154
>U80436-2|AAC71110.1| 928|Caenorhabditis elegans Uncoordinated
protein 73, isoform c protein.
Length = 928
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -2
Query: 620 LFKRNKPIESIDAYSDSDYAGDPLTRRSTSGSVLMIADGPISWASKRQPIVALSSTE 450
+F + + A S S P TR+STS S + A+G + +S PI LSS E
Sbjct: 103 IFANSSKERAAAANSSSSNNNSPATRQSTSTSSPVTANGHTTESSTSAPIGVLSSGE 159
>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
protein 73, isoform a protein.
Length = 2488
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -2
Query: 620 LFKRNKPIESIDAYSDSDYAGDPLTRRSTSGSVLMIADGPISWASKRQPIVALSSTE 450
+F + + A S S P TR+STS S + A+G + +S PI LSS E
Sbjct: 1663 IFANSSKERAAAANSSSSNNNSPATRQSTSTSSPVTANGHTTESSTSAPIGVLSSGE 1719
>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucleotide
exchange factorUNC-73A protein.
Length = 2488
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -2
Query: 620 LFKRNKPIESIDAYSDSDYAGDPLTRRSTSGSVLMIADGPISWASKRQPIVALSSTE 450
+F + + A S S P TR+STS S + A+G + +S PI LSS E
Sbjct: 1663 IFANSSKERAAAANSSSSNNNSPATRQSTSTSSPVTANGHTTESSTSAPIGVLSSGE 1719
>Z95559-3|CAB08998.1| 786|Caenorhabditis elegans Hypothetical
protein Y41E3.4 protein.
Length = 786
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 773 GSLLY-LSTRTRPDIAQAVNLVSRKVENPTREDVTKLKKIFKYLVGTKHKGI 621
G+LLY L+T+ +P +A LV + + N + +L +YL+ KGI
Sbjct: 48 GTLLYQLATKLKPQVAAHTPLVVKYIMNDGIKTEPQLSAAIEYLLSHTVKGI 99
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1
Query: 477 AYSSAIVDRSRVHSRSRLLQRG-IVSQISITGNNRYGHKNKS 355
A S+AI RSRV +RSR+ R +V++ + NR K ++
Sbjct: 272 ARSAAIAARSRVAARSRVAARSRVVARSRVVARNRVAAKRRA 313
>U58755-1|AAB00691.3| 403|Caenorhabditis elegans Nematode astacin
protease protein 8 protein.
Length = 403
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 594 EHRCLQRLGLCWRPIDAKKHFWF 526
E C R LCWR ID K F+F
Sbjct: 335 EDDCRDRTNLCWRWIDRCKSFFF 357
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,804,314
Number of Sequences: 27780
Number of extensions: 405822
Number of successful extensions: 1202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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