Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12c06
(801 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 26 0.47
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 24 1.4
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 24 1.4
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 24 1.9
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 24 1.9
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 24 1.9
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 24 1.9
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 24 1.9
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 24 1.9
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 24 1.9
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 24 1.9
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 24 1.9
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 24 1.9
M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee homeobox-... 23 2.5
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 2.5
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 3.3
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 23 3.3
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 22 7.6
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 22 7.6
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 22 7.6
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 22 7.6
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 22 7.6
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 22 7.6
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 22 7.6
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 22 7.6
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 22 7.6
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 22 7.6
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 25.8 bits (54), Expect = 0.47
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Frame = +1
Query: 304 LKDPD----FTS*IELWLSTCRFIFMSIPVISCNRDLR 405
LK+PD F S + LWL C + I + NRD R
Sbjct: 398 LKNPDAIPAFLSSLFLWLGYCNSLLNPIIYATLNRDFR 435
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 24.2 bits (50), Expect = 1.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 753 YQNQTRYRTSGQSS*QEGRKPH*RRRYKIEENIQIFSGN 637
Y+N+ YR G++S + R R R K + I S N
Sbjct: 283 YKNEREYRKYGETSKERSRDRTERERSKEPKIISSLSNN 321
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 24.2 bits (50), Expect = 1.4
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 10 KSKKEHNTNLNIVQHRQLYVDSITTFQHLLL-MFTHVAETRFYTCINLAQ 156
KSKK LN + YV+ T++H ++ M ++ +T C +L +
Sbjct: 44 KSKKYFEQTLNELNFNLNYVNKGVTYKHTIIEMDSNPIKTALSVCKSLIE 93
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 23.8 bits (49), Expect = 1.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 756 VYQNQTRYRTSGQSS*QEGRKPH*RRRYKIEENIQIFSGN 637
+Y+N+ YR G++S + R R + K + I S N
Sbjct: 49 LYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNN 88
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 23.8 bits (49), Expect = 1.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 756 VYQNQTRYRTSGQSS*QEGRKPH*RRRYKIEENIQIFSGN 637
+Y+N+ YR G++S + R R + K + I S N
Sbjct: 49 LYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNN 88
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 23.8 bits (49), Expect = 1.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 756 VYQNQTRYRTSGQSS*QEGRKPH*RRRYKIEENIQIFSGN 637
+Y+N+ YR G++S + R R + K + I S N
Sbjct: 49 LYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNN 88
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 23.8 bits (49), Expect = 1.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 756 VYQNQTRYRTSGQSS*QEGRKPH*RRRYKIEENIQIFSGN 637
+Y+N+ YR G++S + R R + K + I S N
Sbjct: 49 LYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNN 88
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 23.8 bits (49), Expect = 1.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 756 VYQNQTRYRTSGQSS*QEGRKPH*RRRYKIEENIQIFSGN 637
+Y+N+ YR G++S + R R + K + I S N
Sbjct: 282 LYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNN 321
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.8 bits (49), Expect = 1.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 756 VYQNQTRYRTSGQSS*QEGRKPH*RRRYKIEENIQIFSGN 637
+Y+N+ YR G++S + R R + K + I S N
Sbjct: 282 LYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNN 321
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.8 bits (49), Expect = 1.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 756 VYQNQTRYRTSGQSS*QEGRKPH*RRRYKIEENIQIFSGN 637
+Y+N+ YR G++S + R R + K + I S N
Sbjct: 282 LYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNN 321
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.8 bits (49), Expect = 1.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 756 VYQNQTRYRTSGQSS*QEGRKPH*RRRYKIEENIQIFSGN 637
+Y+N+ YR G++S + R R + K + I S N
Sbjct: 282 LYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNN 321
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.8 bits (49), Expect = 1.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 756 VYQNQTRYRTSGQSS*QEGRKPH*RRRYKIEENIQIFSGN 637
+Y+N+ YR G++S + R R + K + I S N
Sbjct: 282 LYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNN 321
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 23.8 bits (49), Expect = 1.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 756 VYQNQTRYRTSGQSS*QEGRKPH*RRRYKIEENIQIFSGN 637
+Y+N+ YR G++S + R R + K + I S N
Sbjct: 271 LYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNN 310
>M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H15. ).
Length = 74
Score = 23.4 bits (48), Expect = 2.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 761 YLSTRTRPDIAQAVNLVSRKVENPTREDVTKLKK 660
YL+ R R +IA A+ L R+++ + KLKK
Sbjct: 32 YLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 65
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.4 bits (48), Expect = 2.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 784 GKQWEVYCTCLPEP 743
GK+ E+Y C PEP
Sbjct: 204 GKRNEIYYNCCPEP 217
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.3
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = -2
Query: 89 WKVVMLSTYNCLCCTIFKFVLCSFLLLMC 3
WK V L + L C F + S +++C
Sbjct: 421 WKQVALVSDRALLCVFFLTTIVSTTVILC 449
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 23.0 bits (47), Expect = 3.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 74 LSTYNCLCCTIFKFVLCSFLLLMC 3
LS+YNC+ + VL F+++ C
Sbjct: 691 LSSYNCVPINVQFSVLYGFVIIEC 714
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 21.8 bits (44), Expect = 7.6
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -1
Query: 753 YQNQTRYRTSGQSS*QEGRKPH*RRRYKIEENIQIFSGN 637
Y+N+ YR + S + R R R K + I S N
Sbjct: 50 YKNEKEYRKYRERSKERSRDKRERERSKERKIISSLSNN 88
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 21.8 bits (44), Expect = 7.6
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -1
Query: 753 YQNQTRYRTSGQSS*QEGRKPH*RRRYKIEENIQIFSGN 637
Y+N+ YR + S + R R R K + I S N
Sbjct: 50 YKNEKEYRKYRERSKERSRDKRERERSKERKIISSLSNN 88
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 21.8 bits (44), Expect = 7.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 753 YQNQTRYRTSGQSS*QEGRKPH*RRRYKIEENIQIFSGN 637
Y+N+ YR ++S + R R R K + I S N
Sbjct: 50 YKNEREYRKYRETSKERSRDRRERERSKEPKIISSLSNN 88
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 7.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 753 YQNQTRYRTSGQSS*QEGRKPH*RRRYKIEENIQIFSGN 637
Y+N+ YR ++S + R R R K + I S N
Sbjct: 50 YKNEREYRKYRETSKERSRDRRERERSKEPKIISSLSNN 88
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 7.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 753 YQNQTRYRTSGQSS*QEGRKPH*RRRYKIEENIQIFSGN 637
Y+N+ YR ++S + R R R K + I S N
Sbjct: 50 YKNEREYRKYRETSKERSRDRRERERSKEPKIISSLSNN 88
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 7.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 753 YQNQTRYRTSGQSS*QEGRKPH*RRRYKIEENIQIFSGN 637
Y+N+ YR ++S + R R R K + I S N
Sbjct: 50 YKNEREYRKYRETSKERSRDRRERERSKEPKIISSLSNN 88
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 7.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 753 YQNQTRYRTSGQSS*QEGRKPH*RRRYKIEENIQIFSGN 637
Y+N+ YR ++S + R R R K + I S N
Sbjct: 50 YKNEREYRKYRETSKERSRDRRERERSKEPKIISSLSNN 88
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 7.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 753 YQNQTRYRTSGQSS*QEGRKPH*RRRYKIEENIQIFSGN 637
Y+N+ YR ++S + R R R K + I S N
Sbjct: 50 YKNEREYRKYRETSKERSRDRRERERSKEPKIISSLSNN 88
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 7.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 753 YQNQTRYRTSGQSS*QEGRKPH*RRRYKIEENIQIFSGN 637
Y+N+ YR ++S + R R R K + I S N
Sbjct: 50 YKNEREYRKYRETSKERSRDRRERERSKEPKIISSLSNN 88
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.8 bits (44), Expect = 7.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 753 YQNQTRYRTSGQSS*QEGRKPH*RRRYKIEENIQIFSGNQT 631
Y+N+ YR G++S + R R R K + I S N+T
Sbjct: 272 YKNEREYRKYGKTSKERSRDRMERERSKEPKIISSLS-NKT 311
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,187
Number of Sequences: 438
Number of extensions: 5214
Number of successful extensions: 38
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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