Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12c02
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 38 0.001
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 32 0.083
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 32 0.11
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po... 31 0.19
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 31 0.19
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 30 0.34
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 29 0.59
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo... 29 0.59
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 29 0.78
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.78
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 1.0
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 28 1.8
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 3.1
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 27 3.1
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 27 3.1
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 4.1
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 27 4.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 4.1
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 27 4.1
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 4.1
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 27 4.1
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 26 5.5
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 26 5.5
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 26 5.5
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 5.5
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 26 5.5
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 26 7.2
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 26 7.2
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 26 7.2
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 26 7.2
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 26 7.2
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 26 7.2
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 7.2
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ... 25 9.6
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 25 9.6
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 25 9.6
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc... 25 9.6
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc... 25 9.6
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 9.6
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/71 (26%), Positives = 43/71 (60%)
Frame = -2
Query: 705 ELIKKSCDVIQFQRQHRRRLLSYLLQSTKKFYAARNELKRVTEMCQKQHTQLKEYHKRIK 526
+L K+ + + +++ ++ ++ + T+ F+ A+ E ++ E +++L EYH+RI+
Sbjct: 304 KLKKEHYERLNNEKRAIQQKITQMTNETESFFQAKEE--KMIETRDALNSELSEYHERIR 361
Query: 525 ALETQLANQSS 493
ALETQ+ + S
Sbjct: 362 ALETQIESLKS 372
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 32.3 bits (70), Expect = 0.083
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +2
Query: 146 IFCELFDEYPDSSLESFRKNHYRFFKKLLYP 238
++ EL +YP SLES+R+ HY++ KK L P
Sbjct: 149 VYEELARKYPQHSLESWRQ-HYKYMKKRLPP 178
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 31.9 bits (69), Expect = 0.11
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -2
Query: 528 KALETQLANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPTKSTPYSTHHYQ 367
K + Q + S Q SP +P S +++ ++QTTPS RPT P H +Q
Sbjct: 12 KVMLNQQQDPSDAQSSPTFVP-SANPSLTTPWLQTTPSANRPT-WLPLQQHMHQ 63
>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 328
Score = 31.1 bits (67), Expect = 0.19
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Frame = -2
Query: 510 LANQSSRQVSPFNIPISPT--NNIS--PSFIQTTPSCKRPTKSTPYSTHHY---QSNLLT 352
LAN SSR S N+ IS T +NIS P T+P + + T Y Q L
Sbjct: 122 LANSSSRTESEPNVQISDTDFDNISTEPRNQTTSPLDLETGQGDHFCTSLYDLIQFGKLR 181
Query: 351 PSRISKQRSANFSAHSQKSNTSNK 280
P I+++ +AN+ + Q+ NT NK
Sbjct: 182 PPGINEE-NANYPFNPQEVNTLNK 204
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 31.1 bits (67), Expect = 0.19
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -2
Query: 468 PISP-TNNISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTP-SRISKQRSANFSAHSQKS 295
P P +NN +PS + ++ R T S + ++ QS+L +P +R R F++ KS
Sbjct: 238 PAPPNSNNANPSTLFSSIPSSRHTTSNHFPSNSAQSSLFSPTARPLTARKLGFASSQTKS 297
Query: 294 NTSNKIS 274
SN S
Sbjct: 298 AVSNNHS 304
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 30.3 bits (65), Expect = 0.34
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -2
Query: 480 PFNIPISPTNNISPSFIQTT--PSCKRPTKSTPYSTHHYQSNLLTP 349
P P P NN+ PS++++ S + +S P ST +S+ P
Sbjct: 184 PAQPPAQPVNNVLPSYVRSNSRSSARSTARSAPRSTQRSRSSSANP 229
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 29.5 bits (63), Expect = 0.59
Identities = 24/91 (26%), Positives = 41/91 (45%)
Frame = -2
Query: 513 QLANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRISK 334
Q+A SS V +++P PTN+ TT + P+ + +QS LTPS
Sbjct: 112 QVAGSSSSYV--YSVP--PTNS-------TTSQASAKHSAVPHRSSQFQSTTLTPSTTDS 160
Query: 333 QRSANFSAHSQKSNTSNKISSTVFTPPTPES 241
+ S+ S ++ S+ +S + +P S
Sbjct: 161 SSTDVSSSDSVSTSASSSNASNTVSVTSPAS 191
>SPAC1B3.07c |vps28||ESCRT I complex subunit
Vps28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 29.5 bits (63), Expect = 0.59
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -2
Query: 579 EMCQKQHTQLKEYHKRIKALETQLANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPT 400
+ C K Q + IK ++ ++++ S+ S F+ IS T S + TTP PT
Sbjct: 87 DFCSKYRLQCP---RAIKRIQEGISDERSQSNSTFSNAISTTAEPSIAMNDTTPQTVNPT 143
Query: 399 KS 394
K+
Sbjct: 144 KA 145
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 29.1 bits (62), Expect = 0.78
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -2
Query: 486 VSPFNIPISPTNNISPSFIQTTPSCKRPTKSTPYSTHHY 370
VSP NIP+SP+++ P + T PS K + P + ++
Sbjct: 306 VSP-NIPVSPSSSFVPMYPTTFPSSKPQIVNAPPAPSYF 343
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.1 bits (62), Expect = 0.78
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -2
Query: 714 DPEEL--IKKSCDVIQFQRQHRRRLLSYLLQSTKKFYAARNELKRVTEMCQKQHTQLKEY 541
DP +L +KK+C+ ++ ++Q L + T F N L E +K+ Q
Sbjct: 1350 DPTQLEELKKNCEALEKEKQELETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQANTK 1409
Query: 540 HKRIKA 523
+ R+ A
Sbjct: 1410 NTRLAA 1415
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 1.0
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Frame = -2
Query: 489 QVSPFNIPISPTNNISPSFIQTTPSCKRPTKS--TPYSTHHYQSNLLTPSRIS-----KQ 331
+ + ++ P+S ++ + S + ++ S PT S TP ST S+LL PS +S
Sbjct: 95 ETNSYSSPVSSYSDPATSQLPSSTSFFSPTSSEYTPSSTE--SSSLLDPSSVSSAILPSS 152
Query: 330 RSANFSAHSQKSNTSNKISSTVFT 259
S S S ++S+ ++S+ F+
Sbjct: 153 TSVEVSISSSSLSSSDPLTSSTFS 176
Score = 27.5 bits (58), Expect = 2.4
Identities = 23/77 (29%), Positives = 36/77 (46%)
Frame = -2
Query: 498 SSRQVSPFNIPISPTNNISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRISKQRSAN 319
SS S I S +++ SP+ +T S + S+P ST S + + S S S+
Sbjct: 264 SSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTST---SSTISSSSSSSSSFSST 320
Query: 318 FSAHSQKSNTSNKISST 268
S+ S S++S S T
Sbjct: 321 LSSSSMSSSSSFSSSPT 337
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.9 bits (59), Expect = 1.8
Identities = 21/79 (26%), Positives = 37/79 (46%)
Frame = -2
Query: 483 SPFNIPISPTNNISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRISKQRSANFSAHS 304
SP P SP + SP+++ ++PS + S ++ Y + S S SA ++S
Sbjct: 1555 SPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYS 1614
Query: 303 QKSNTSNKISSTVFTPPTP 247
S S +S ++P +P
Sbjct: 1615 PTS-PSYSPTSPSYSPTSP 1632
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.9 bits (59), Expect = 1.8
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = -2
Query: 537 KRIKALETQLANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPTKSTPYSTHHYQSNL 358
KR N SS ++ S T SPS Q+TPS T+S+ +T S
Sbjct: 168 KRAATASFSYTNVSSSVIATAYTSASSTILSSPSVEQSTPSIITQTESS--TTTEGSSVA 225
Query: 357 LTPSRISKQRSANFSAHSQKSN-TSNKISST 268
+ S I+ ++F + N T+NK ++
Sbjct: 226 SSESTIANSDQSSFITYESTQNPTANKTDAS 256
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 2.4
Identities = 26/95 (27%), Positives = 47/95 (49%)
Frame = -2
Query: 525 ALETQLANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPS 346
++ T ++ S ++ + IS ++ PS + S + S+P ST S+ T S
Sbjct: 544 SIPTSSSSDFSSSITTISSGISSSS--IPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601
Query: 345 RISKQRSANFSAHSQKSNTSNKISSTVFTPPTPES 241
S SA+ S+ S S++ + SST+ + PTP +
Sbjct: 602 TFS---SASTSSPSSISSSISS-SSTILSSPTPST 632
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.1 bits (57), Expect = 3.1
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Frame = -2
Query: 498 SSRQVSPFNIPIS-PTNNISPSFIQTTPSCKRPTK---STPYSTHHYQSNLLTPSRISKQ 331
SS + N+P + PT + +P + T + + P + + P T H S T + SK+
Sbjct: 414 SSTVKNEVNVPSTIPTESENPVAVGGT-TAEHPVQEAVTAPTETAHDFSKETTTA--SKR 470
Query: 330 RSANFSAHSQKSNTSNKISSTVFTPPTPES 241
S + A ++K + K SST P TP +
Sbjct: 471 VSKHDKASAEKHKVARKPSSTGQEPTTPST 500
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -1
Query: 325 SEFQCTQSEVEYIKQNFFDGFHTAHAGVGRI*QLLKKPVMILPERLQ*RVRIFVKQLAEN 146
S++ + E+ +KQ F G H H QLLK+ L E L ++R QL +
Sbjct: 341 SDYDEIKRELSVLKQIEFSGEHATHENTSLESQLLKREKQ-LSEELA-KLRSTNAQLTDR 398
Query: 145 ITR 137
IT+
Sbjct: 399 ITQ 401
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 27.1 bits (57), Expect = 3.1
Identities = 27/140 (19%), Positives = 56/140 (40%), Gaps = 4/140 (2%)
Frame = -2
Query: 678 IQFQRQHRRRLLSYLLQSTKKFYAARNELKRVTEMCQKQHTQLKEYHKRIKALETQ---L 508
I+F ++ L+ L + K NEL + ++ + +KRI L+ Q L
Sbjct: 316 IEFSKKDESSKLNILSELESKISEKENELSEILPKYNAIVSEADDLNKRIMLLKNQKQSL 375
Query: 507 ANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPTKSTPY-STHHYQSNLLTPSRISKQ 331
++ SR S F I +Q + +++ Y T + + +++S++
Sbjct: 376 LDKQSR-TSQFTTKKERDEWIRNQLLQINRNINSTKENSDYLKTEYDEMENELKAKLSRK 434
Query: 330 RSANFSAHSQKSNTSNKISS 271
+ S SQ S +++
Sbjct: 435 KEIEISLESQGDRMSQLLAN 454
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = -2
Query: 438 SFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRISKQRSANFSAHSQKSNTSNKISSTVFT 259
S + TT + S+ T Y S+ L+ ++ ++ S HS +++S+ SS++
Sbjct: 588 STVSTTSTVSESGSSSASITSTYPSSTLS---MTTSHLSSSSVHSSSAHSSSSRSSSMSL 644
Query: 258 PPTPES 241
PP+ S
Sbjct: 645 PPSAGS 650
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -2
Query: 576 MCQKQHTQLKEYHKRIKALETQLANQSSRQVSPFNIPISPTNNIS-PSFIQTTPSCKRPT 400
MC QH+ LK+ H++++ T ++N + + S + PS + ++ S P
Sbjct: 1 MCPSQHSSLKDIHRQLE--NTAISNPTENADPSSYVDGSNIMDFKHPSIVSSSASSSYPI 58
Query: 399 KSTP 388
P
Sbjct: 59 SHVP 62
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = -2
Query: 474 NIPISPTNNISPSFIQTTPSCKRPTKSTPYSTHHY-QSNLLTPSRISKQRSANFSAHSQK 298
N ++PT+ + S TT + STP S ++ T S + S+ S
Sbjct: 611 NSTVAPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTP 670
Query: 297 SNTSNKISSTVFT 259
S+ S+ + ++ FT
Sbjct: 671 SSNSSIVPTSTFT 683
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 406 TYKEHPILYSSLSV*PLDSLADKQAEVSEFQCTQSEVEYIKQNFFD 269
T K PILYSS SV + + + A F C S+VE K ++ D
Sbjct: 874 TEKLLPILYSSRSVEEVHDVTNAIATQFPFACFDSKVE--KYSYID 917
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.1
Identities = 22/69 (31%), Positives = 32/69 (46%)
Frame = -2
Query: 444 SPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRISKQRSANFSAHSQKSNTSNKISSTV 265
SP IQ S STP ST + N+ TPS S R ++ + +++I S
Sbjct: 258 SPLTIQRISSA---APSTPTSTENVNYNMTTPSSPSYSRQTGPASET----INDEIDSPN 310
Query: 264 FTPPTPESV 238
F PTP ++
Sbjct: 311 FFFPTPLNI 319
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/67 (20%), Positives = 31/67 (46%)
Frame = +3
Query: 558 CVAFDTFQSHASVHCVPRKTFLSIVIDKRAISFYAAFETVSHRKTSLSTLQDQ*SNLGFL 737
C+ ++T Q A V + + ++S+ ++ HR +LS +D+ +
Sbjct: 415 CLNYET-QPLAPVISLSHRAYVSLPTQPELAKYHCLIVPTGHRINTLSCDEDEWDEIRNF 473
Query: 738 VSCLALI 758
+ C+AL+
Sbjct: 474 MKCIALM 480
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = -2
Query: 546 EYHKRIKALETQLANQSSRQVSPFNIPISPTNNISPSFIQ-TTPSCKRPTKSTPYSTHHY 370
+Y KR A A + SP P N I+P++ P+ + P +ST+
Sbjct: 295 KYQKRAAAAAAASATAPPQVTSPMVSQTQPVNPITPNYSSIPLPAERNPKTPQSFSTNIV 354
Query: 369 QSNLLTPSRIS 337
Q +P +S
Sbjct: 355 QCASPSPLPLS 365
>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/61 (24%), Positives = 23/61 (37%)
Frame = -2
Query: 690 SCDVIQFQRQHRRRLLSYLLQSTKKFYAARNELKRVTEMCQKQHTQLKEYHKRIKALETQ 511
S D F H RR + ++ A+ E++ T + H R K +ET
Sbjct: 138 SADARNFHGWHYRRYVVSQIERAGNCSLAKKEMEYTTSAIATNFSNFSALHNRTKLIETI 197
Query: 510 L 508
L
Sbjct: 198 L 198
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -2
Query: 465 ISPTNNISPSFIQTTPSCKRPTKST 391
IS T+ IS F+++ P KRPTKST
Sbjct: 357 ISKTD-ISNFFMKSIPPSKRPTKST 380
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 789 LVCRMPCSAMKLVPDMKQEIQDYFTDPE 706
+VC P S KL+P +Q IQD+ P+
Sbjct: 885 MVCS-PKSYYKLIPSFEQLIQDFHIQPQ 911
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 26.2 bits (55), Expect = 5.5
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = -2
Query: 417 SCKRPTKSTPYSTHHYQSNLLTPSRISKQRSANFSAHSQKSNTSNKISSTVFTPPTPES 241
SC K S H + LTP+ S + +NF ++S+T IS + T P ES
Sbjct: 77 SCDIDFKDYSTSAFHLHFSPLTPNHASTEAVSNF----KQSSTIPSISKSNLTNPPLES 131
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 25.8 bits (54), Expect = 7.2
Identities = 25/90 (27%), Positives = 41/90 (45%)
Frame = -2
Query: 612 YAARNELKRVTEMCQKQHTQLKEYHKRIKALETQLANQSSRQVSPFNIPISPTNNISPSF 433
+ A+ E + +K+HT K Y ++ALE+QLAN S I ++P I PS
Sbjct: 46 FVAKRECIIAGDNRKKRHT--KTY---VEALESQLANMESTLA---KIKVAPVEKI-PSL 96
Query: 432 IQTTPSCKRPTKSTPYSTHHYQSNLLTPSR 343
+ + S P T + Q++ S+
Sbjct: 97 LAGISFKDHLSASLPNKTSYEQADTNATSK 126
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 468 PISPTNNISPSFIQTTPSCKRPTKSTPYST 379
P+SP++ S + P+ K+ TP+ST
Sbjct: 251 PVSPSSMASRRGLNIPPTLKQAVSETPFST 280
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.8 bits (54), Expect = 7.2
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
Frame = -2
Query: 570 QKQHTQLKEYHKRIKALETQLANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPTKST 391
++ HT LK + R + + + ++P N +S ++ I F PS K T
Sbjct: 113 KQTHTVLKRLYDR-----QSVISDHEKLLTPQN--VSNSSQILSPFTSLLPSTLSTLKDT 165
Query: 390 PYSTHHYQSNL------LTPSRISKQRSANFSAHSQKSNTSNKISSTVFTPPT 250
P S + NL L P +++ R+ F ++ + S V T PT
Sbjct: 166 PLSVSQNEKNLETVGEVLVPETVAQHRT-KFYDYTLDEMENETESGQVETTPT 217
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -2
Query: 384 STHHYQSNLLTPSRISKQRSANFSAHSQKSNTSNKISSTVFTPPTPESV 238
ST NL T I RS S+H Q + +K +S PP+P S+
Sbjct: 139 STTSITENLPT---IDPTRSTRSSSHIQSLSPESKQTSDGHRPPSPTSI 184
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 307 QSEVEYIKQNFFDGFHTAHAGVGRI*QLLK 218
QS+ E + +NFF T H + ++ LLK
Sbjct: 74 QSQTEDLLKNFFPEIQTIHKKISQVQSLLK 103
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -2
Query: 807 LKDSTCLVCRMPCSAMKLVPDMKQEIQDYFTDPE 706
L+ CL C +PC KL+ + + + DP+
Sbjct: 143 LESFRCLCCHVPCKNKKLLREHMNNKRHFRLDPK 176
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 468 PISPTNNISPSFIQTTPSCKRPTKSTP 388
P SPT IS SF+ +P KRP + P
Sbjct: 124 PSSPT--ISNSFVSVSPLLKRPQQKGP 148
>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
Ade6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -2
Query: 792 CLVCRMPCSAMKLVPDMKQEIQDYFTDPEELIK--KSCDVIQFQRQH 658
C++ S K + ++ I FTDP+ +++ K C ++ + +H
Sbjct: 30 CIILDAANSPAKQIDGGREHIDASFTDPDAIVELSKKCTLLTTEIEH 76
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -2
Query: 597 ELKRVTEMCQKQHTQLKEYHKRIKALETQLANQSSRQVSPFNIPISPTNNISPSF 433
E + T+ + H +K+ H R + T + SS FN+ + P +N+ S+
Sbjct: 1115 ESRSKTDGPKSMHDLIKQLHMRKHSSHTNQSTGSSESDDLFNLDL-PISNLETSY 1168
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = -2
Query: 465 ISPTNNISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRISKQRSANFSAHSQKSNTS 286
+ T+++ P I+ S + KS + + L PSR ++ + S HS +
Sbjct: 679 VPTTSSVPPVEIKNKDSKPKVEKSLDKHNMNNDRSFLVPSRDARNSLTSLSLHSNVAKNK 738
Query: 285 NKISS 271
+ SS
Sbjct: 739 SSHSS 743
>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 674 SFKGSIEGDCSLIYYNRQKSFTRHAMN 594
SFKG IE S++ + KSFT N
Sbjct: 143 SFKGDIEASGSILTTHENKSFTLKLAN 169
>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 682 IARLLYQLFRISEVILDFLFHVWH*FHSRTRHSTY*TRAVF 804
+A L + FR+S+ LDFL H F R +Y T F
Sbjct: 202 VANSLSEPFRLSKPKLDFLKHACTMFRGTHRFHSYTTEKGF 242
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 9.6
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Frame = -2
Query: 558 TQLKEYHKRIKALETQLANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPTKSTPYST 379
+QL E +++ E + + R+ +P + +F+ CK K+ PY
Sbjct: 336 SQLSENKLTLESFEHRKSFDQVREEAPLEEDSLEQQLLRDAFLLIRALCKLSIKNIPYE- 394
Query: 378 HHYQSNLLTPSRISKQRSANFSAHSQKS--NTSNKISSTVFTP---PTP 247
H Y +L + S SK S + H ++ N + I+ + +P PTP
Sbjct: 395 HEY--DLKSQSMRSKLMSLHLIYHILRTYMNILSDINVKIRSPTSTPTP 441
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,458
Number of Sequences: 5004
Number of extensions: 65357
Number of successful extensions: 310
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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