Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12c02
(808 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0070 - 3844270-3846228 32 0.62
06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,493... 30 2.5
09_04_0484 + 17990020-17990488,17990930-17991009,17991122-179915... 29 3.3
05_03_0657 + 16694833-16694963,16695567-16695684,16696280-166963... 29 3.3
01_05_0286 - 20403748-20403828,20404493-20404693,20404774-204049... 29 3.3
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062... 29 5.8
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334... 28 7.6
07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749... 28 7.6
04_04_0043 - 22330282-22330410,22330484-22330568,22330602-223307... 28 7.6
>09_02_0070 - 3844270-3846228
Length = 652
Score = 31.9 bits (69), Expect = 0.62
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -2
Query: 531 IKALETQLANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPTKSTPY 385
++A+ L SSR + P +P + S SF+ +P+ RP S +
Sbjct: 52 LRAISVSLPPPSSRALFPLPLPFPRNASFSTSFVFASPAAARPASSLSF 100
>06_01_0675 +
4937309-4937354,4937606-4937718,4937810-4937905,
4938003-4938059,4938145-4938300,4938402-4938486,
4938727-4938817,4938896-4939060,4939150-4939345,
4939593-4939731,4940187-4941874,4942575-4942765,
4942850-4942994
Length = 1055
Score = 29.9 bits (64), Expect = 2.5
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 3/128 (2%)
Frame = -2
Query: 705 ELIKKSCDVIQFQRQHRRRLLSYLLQSTKKFYAARNELKRVTEMCQKQHTQLKEYHKRIK 526
+L++++ +Q Q++H +R S Q K A + L V + K+ T + + +
Sbjct: 519 QLLQQNAIHLQQQQEHLQRQQSQPAQQLK----AASSLHSVEQHKLKEQTSGGQVASQAQ 574
Query: 525 ALETQLANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPT---KSTPYSTHHYQSNLL 355
L Q+ SS Q+ +P SPT+ + + S ++PT S YQ LL
Sbjct: 575 MLN-QIFPPSSSQLQQLGLPKSPTHRQGLTGLPIAGSLQQPTLTQTSQVQQAAEYQQALL 633
Query: 354 TPSRISKQ 331
+ +Q
Sbjct: 634 QSQQQQQQ 641
>09_04_0484 +
17990020-17990488,17990930-17991009,17991122-17991586,
17994670-17994756,17994887-17995018,17995102-17995293,
17995409-17995495,17995621-17996295
Length = 728
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +2
Query: 188 ESFRKNHYRFFKKLLYPTDSGVGGVKTVEEILFDVFDF*LCALKFADLCLLI 343
+ F KN + Y +G G V T EEIL + + L K+ADL +LI
Sbjct: 631 QGFYKNEFLGLTFPKYNDQAGAGTVITGEEILTNYWQVQLGYSKWADLAILI 682
>05_03_0657 + 16694833-16694963,16695567-16695684,16696280-16696376,
16700126-16700232,16700473-16700595,16700791-16700944,
16701237-16701297,16701417-16701781,16701875-16703483,
16703697-16703940
Length = 1002
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Frame = -2
Query: 654 RRLLSYLLQS---TKKFYAARNELKRVTEMC---QKQHTQLKEYHKR--IKALETQLANQ 499
R + S++LQ T+ + A +N KR+ E+C Q + +++R K QL N
Sbjct: 816 RVIESHMLQKDDLTEHYEAMQNVRKRLRELCAEYQATGPTARLFNQRGSSKNSPRQLINI 875
Query: 498 SSRQVSPFNIPISPTNNISP 439
S + SPF+ ++PT SP
Sbjct: 876 VSGRWSPFHDTVAPTTGGSP 895
>01_05_0286 -
20403748-20403828,20404493-20404693,20404774-20404955,
20405022-20405187,20405318-20405506,20409155-20409238,
20409482-20409550,20409638-20409700,20410327-20410425,
20410882-20410983,20411237-20411341,20412259-20412372
Length = 484
Score = 29.5 bits (63), Expect = 3.3
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Frame = -2
Query: 597 ELKRVTEMCQKQHTQLKEYHKRIKALETQLANQSSRQVSPFNIPISPTNNISPSFIQT-T 421
E+K + + Q H Q++ I A + + ++ + S N P PT +P ++ +
Sbjct: 234 EMKEMKQNQQSMHNQIQSLTNIIAAFKEEKTISTTSKNSKPNKPNPPTQ--TPVIAKSLS 291
Query: 420 PSCKRPTKSTPYSTHHYQSNLLTPSRISKQRSANFSAHSQKSNTSNKISSTVFTPPTPES 241
S +R KST S + NL +K++ N AH+ SN ++ T E+
Sbjct: 292 GSTRRLRKSTIKSNTDFVYNL----GATKKKPKNAQAHNLISNDLTSMAEFKCTAEDEET 347
Query: 240 V 238
+
Sbjct: 348 I 348
>07_03_0572 -
19604643-19604745,19604947-19605629,19605786-19606284,
19606370-19606878,19607110-19607148,19607347-19607411,
19609081-19609201,19610229-19610315,19611096-19611179,
19611925-19612175,19612869-19612962,19613043-19613284,
19614187-19614505
Length = 1031
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/92 (21%), Positives = 39/92 (42%)
Frame = -2
Query: 507 ANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRISKQR 328
+ +SS++V PF I+ N P F P + P ST Y+ + L +R+
Sbjct: 105 SQESSQKVHPFEEEITSLLNNPPDFQNFMPGDRCPEMSTSYNWVETDAQLEDLARLLDDE 164
Query: 327 SANFSAHSQKSNTSNKISSTVFTPPTPESVGY 232
A F+ +++ + + + T + + Y
Sbjct: 165 KA-FAVDTEQHSLRSFLGYTALMQISTQKADY 195
>12_01_0425 +
3347804-3348284,3348544-3348759,3349038-3349588,
3349752-3349815,3349915-3349975,3350271-3350409,
3350561-3350677,3350794-3350971,3351218-3351828
Length = 805
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 396 STPYSTHHYQSNLLTPSRISKQRSANFSAHSQKSNTSNKISSTVFTPPTP 247
S+P+S+ +Q + TPS S Q + SN ++ F PTP
Sbjct: 411 SSPFSSTAFQQSAPTPSMFSFQPQTQTAPTGGFPGISNTMNQAPFGQPTP 460
>07_01_0893 +
7484598-7484744,7484837-7484902,7494387-7494530,
7494860-7495235,7495904-7496017,7496282-7496454,
7496562-7496669,7497311-7497377,7497791-7497904,
7498121-7498257,7498727-7498813,7498962-7498986,
7499044-7499266,7499770-7499947,7500039-7500152,
7500249-7500380,7500488-7500588,7500720-7500933
Length = 839
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -2
Query: 459 PTNNISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRISKQRSANFSAHSQKSNTS 286
PT N+ S +QTTP K+ + S + + K+ S+ SQ+SN S
Sbjct: 243 PTENVICSQLQTTPPSKQTEQENSKSNSNKDNACKETQYADKKASSKDFVCSQQSNNS 300
>04_04_0043 -
22330282-22330410,22330484-22330568,22330602-22330724,
22330839-22330879,22331081-22331137,22331530-22331583,
22331646-22331650,22332392-22332500
Length = 200
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 367 LIVMSRVWGALCRSLA*GCRLNEAWRYVICRRYRNIERG 483
LI MSR+W LC S+ L E W + +NI G
Sbjct: 161 LIHMSRIWQMLCASIQTLRYLAEGWHFPPLWEGKNITEG 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,423,242
Number of Sequences: 37544
Number of extensions: 378729
Number of successful extensions: 1053
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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