Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12c02
(808 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75711-6|CAB00037.3| 387|Caenorhabditis elegans Hypothetical pr... 38 0.011
U40933-5|AAA81675.1| 1116|Caenorhabditis elegans Hypothetical pr... 35 0.060
Z75710-5|CAB54207.1| 240|Caenorhabditis elegans Hypothetical pr... 34 0.10
AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical ... 34 0.14
AF024502-4|AAB70374.1| 675|Caenorhabditis elegans Hypothetical ... 33 0.32
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 31 0.97
AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical... 31 0.97
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z81037-1|CAB02745.1| 819|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z68120-1|CAA92199.3| 711|Caenorhabditis elegans Hypothetical pr... 30 2.2
AL033514-4|CAA22094.2| 827|Caenorhabditis elegans Hypothetical ... 30 2.2
AF218866-1|AAF67103.1| 711|Caenorhabditis elegans transmembrane... 30 2.2
Z93387-5|CAB54299.3| 134|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z83114-4|CAB05554.4| 739|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical pr... 29 3.9
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 3.9
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 3.9
AF045642-11|AAC02584.1| 443|Caenorhabditis elegans Hypothetical... 29 3.9
U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase ... 29 5.2
U40424-1|AAA81456.2| 461|Caenorhabditis elegans Twik family of ... 29 5.2
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 29 5.2
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 29 5.2
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 29 5.2
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 29 5.2
AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical ... 29 5.2
AF083650-1|AAC32861.1| 461|Caenorhabditis elegans potassium cha... 29 5.2
AC024790-3|AAF60637.1| 446|Caenorhabditis elegans Hypothetical ... 28 6.8
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p... 28 9.0
Z68342-9|CAD91630.2| 626|Caenorhabditis elegans Hypothetical pr... 28 9.0
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 28 9.0
AL110499-3|CAE18038.1| 437|Caenorhabditis elegans Hypothetical ... 28 9.0
>Z75711-6|CAB00037.3| 387|Caenorhabditis elegans Hypothetical
protein K02B12.8 protein.
Length = 387
Score = 37.5 bits (83), Expect = 0.011
Identities = 45/195 (23%), Positives = 81/195 (41%), Gaps = 6/195 (3%)
Frame = -2
Query: 798 STCLVCRMPCSAMKLVPDMKQEIQDYFTDPEELIKKSCDVIQ----FQRQHRRRLLSYLL 631
+ CL+C+ ++L ++ I+ YF DP +++ S IQ FQ+ R L+ YL
Sbjct: 37 AVCLICKKNVRLVRLDGNISSGIKIYFADPIKMVADSLAKIQKKIDFQQSTRDHLVKYLT 96
Query: 630 QSTKKFYAARNELKRVTEMCQKQHTQLKEYHKRIKALETQL-ANQSSRQVSPFNIPISPT 454
+ +K + + Q +L E I+ E +L A++ R + I
Sbjct: 97 KEKEKKRQMEVYFRTKGQEFDSQRKKLAEATAWIQMAEKKLQASEEERVKAEREIEECQA 156
Query: 453 NNISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRISKQRSANFSAHSQKSNTSNKIS 274
S + + + + TP+ +S PS + + SAN +T N +S
Sbjct: 157 KLKSMTNLMSADTLGM-NSQTPFPFSLAESQETAPSLV--ESSAN--------STFNMVS 205
Query: 273 STVFTP-PTPESVGY 232
V +P +P S+ Y
Sbjct: 206 PLVSSPASSPNSINY 220
>U40933-5|AAA81675.1| 1116|Caenorhabditis elegans Hypothetical protein
F20D12.2 protein.
Length = 1116
Score = 35.1 bits (77), Expect = 0.060
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = -2
Query: 681 VIQFQRQHRRRLLSYLLQSTKKFYAARNELKRVTEMCQKQHTQLKEYHKRIKALETQ 511
VI F+R+ + R+++ + Q K + R LKR+ E QK+ + + +ET+
Sbjct: 923 VIMFKRRRQHRIVNDMFQKWKSYTKKRKALKRIAEEKQKRENEFFSRFNKCALIETR 979
>Z75710-5|CAB54207.1| 240|Caenorhabditis elegans Hypothetical
protein D1081.9 protein.
Length = 240
Score = 34.3 bits (75), Expect = 0.10
Identities = 37/186 (19%), Positives = 85/186 (45%), Gaps = 8/186 (4%)
Frame = -2
Query: 801 DSTCLVCRMPCSAMKLVPDMKQEIQDYFTDP----EELIKKSCDVIQFQRQHRRRLL--- 643
+S C +C+ P ++ +++ ++ + F DP +L+ + V+ FQ + R +
Sbjct: 37 NSQCYLCKKPLKVDEINKNLRPDLMELFKDPRQLASDLVNELKQVVAFQAKQREIYVKCK 96
Query: 642 -SYLLQSTKKFYAARNELKRVTEMCQKQHTQLKEYHKRIKALETQLANQSSRQVSPFNIP 466
+ + T++F AR++ T+ +K+ E + ++K + + NQ ++ +
Sbjct: 97 NAEAKKDTERFAEARSKHVEKTQEIEKRKKAFLEDNVKLKNAKEE-KNQLMARLK--ELR 153
Query: 465 ISPTNNISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRISKQRSANFSAHSQKSNTS 286
P+ N+S + S R P+S + + P + ++ S FS + + +TS
Sbjct: 154 EQPSQNLS---VNKRRSNTR--TEPPFS----KISRTGPPSVMRKASHEFSLNLRDQSTS 204
Query: 285 NKISST 268
++ST
Sbjct: 205 KILTST 210
>AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical
protein Y46C8AL.2 protein.
Length = 456
Score = 33.9 bits (74), Expect = 0.14
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Frame = -2
Query: 531 IKALETQLANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLT 352
+K+ T ++ + +P P +PT S TTP+ + T +TP + +S T
Sbjct: 217 MKSTPTTPTTPTTMKSTP-TTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTT 275
Query: 351 PSRISKQRSANFSAHSQKS-----NTSNKISSTVFTPPTPESV 238
P+ + +S + + KS T + ST TP TP ++
Sbjct: 276 PTTPTTMKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTM 318
Score = 33.9 bits (74), Expect = 0.14
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = -2
Query: 531 IKALETQLANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLT 352
+K+ T ++ + +P P +PT S TTP+ + T +TP + +S T
Sbjct: 331 MKSTPTTPTTPTTMKSTP-TTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTT 389
Query: 351 PSRISKQRSANFSAHSQKSNTSNKISSTVF--TPPTPESV 238
P+ + +S + + KS + + T TP TP ++
Sbjct: 390 PTTPTTMKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTM 429
Score = 31.1 bits (67), Expect = 0.97
Identities = 21/93 (22%), Positives = 44/93 (47%)
Frame = -2
Query: 516 TQLANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRIS 337
T + + + +P + +PT +P+ +++TP+ KSTP + + TP+ +
Sbjct: 254 TTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPT 313
Query: 336 KQRSANFSAHSQKSNTSNKISSTVFTPPTPESV 238
+ + + + T+ K ST TP TP ++
Sbjct: 314 TPTTMKSTPTTPTTPTTMK--STPTTPTTPTTM 344
Score = 31.1 bits (67), Expect = 0.97
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = -2
Query: 516 TQLANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRIS 337
T S +P + +PT +P+ +++TP+ KSTP + +S+ TP+ +
Sbjct: 391 TTPTTMKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTMKSTPTTPSTMKSSPTTPTTMK 450
Query: 336 KQRSAN 319
N
Sbjct: 451 TSSITN 456
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/75 (21%), Positives = 36/75 (48%)
Frame = -2
Query: 516 TQLANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRIS 337
T + + + +P + +PT +P+ +++TP+ KSTP + + TP+ +
Sbjct: 368 TTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPT 427
Query: 336 KQRSANFSAHSQKSN 292
+S + + KS+
Sbjct: 428 TMKSTPTTPSTMKSS 442
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/82 (24%), Positives = 35/82 (42%)
Frame = -2
Query: 483 SPFNIPISPTNNISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRISKQRSANFSAHS 304
+P + +PT + TTP+ + T +TP + +S TP+ + +S
Sbjct: 154 TPSTMKSTPTTPTTIKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKST-----P 208
Query: 303 QKSNTSNKISSTVFTPPTPESV 238
T + ST TP TP ++
Sbjct: 209 TTPTTPTTMKSTPTTPTTPTTM 230
Score = 28.3 bits (60), Expect = 6.8
Identities = 22/90 (24%), Positives = 38/90 (42%)
Frame = -2
Query: 507 ANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRISKQR 328
+ S +P I +PT + TTP+ KSTP + + TP+ +
Sbjct: 156 STMKSTPTTPTTIKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPT 215
Query: 327 SANFSAHSQKSNTSNKISSTVFTPPTPESV 238
+ + + + T+ K ST TP TP ++
Sbjct: 216 TMKSTPTTPTTPTTMK--STPTTPTTPTTM 243
Score = 27.9 bits (59), Expect = 9.0
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Frame = -2
Query: 531 IKALETQLANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLT 352
+K+ T ++ + +P P +PT S TTP+ + T +TP + +S T
Sbjct: 357 MKSTPTTPTTPTTMKSTP-TTPTTPTTMKSTPTTPTTPTTMKSTPTTPTT---MKSTPTT 412
Query: 351 PSRISKQRSANFSAHSQKS--NTSNKISSTVFTPPT 250
P+ + +S + + KS T + + S+ TP T
Sbjct: 413 PTTPTTMKSTPTTPTTMKSTPTTPSTMKSSPTTPTT 448
>AF024502-4|AAB70374.1| 675|Caenorhabditis elegans Hypothetical
protein M151.2 protein.
Length = 675
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = -2
Query: 654 RRLLSYLLQSTKKFYAARNE-LKRVTEMCQKQHTQLKEYHKRIKALETQLANQSS 493
+RLL ++ K+ AA+ E ++++ E +K+ +LKE +AL+TQL Q++
Sbjct: 76 QRLLQRTDEAAKQSAAAQEEQIEKLAEQGRKKDDKLKELENNAEALKTQLQEQTN 130
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 31.1 bits (67), Expect = 0.97
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Frame = -2
Query: 624 TKKFYAARNELKRVTEMCQKQHTQLKEYHKRIKALETQLANQSSRQVSPFNIPISPTNN- 448
T+ + A +R E ++ T + KRI T + P++ T+
Sbjct: 249 TRPYVAPSTTTQRYIEPTTQRPTTRRATTKRITTTTTAAPTTPRLTTARATTPLATTSRP 308
Query: 447 ISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRISKQRSANFSAHSQKSNTSNKISST 268
+PS TTP P +TP +T P R SK R + + ++ T+ + ++T
Sbjct: 309 TTPS--PTTPRATTPLATTPLATTRAPLPPSPPPRTSK-RPVTQAPTTPRATTTRRPTTT 365
Query: 267 VFTP-PTP 247
TP PTP
Sbjct: 366 --TPRPTP 371
>AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical
protein Y105E8A.26b protein.
Length = 1133
Score = 31.1 bits (67), Expect = 0.97
Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Frame = -2
Query: 600 NELKRVTEMCQKQHTQLKEYHKRIKALETQLANQSSRQVSPFNIPISPTNNISPSFIQTT 421
+E++ + M + QH QL + + ++ S +S F S +N P T
Sbjct: 765 SEMREYSTMPRPQHHQLGQ---DFGGNRNRQSSNSQSTLSTFVTTASSSNPPRPLLTPTR 821
Query: 420 PSCKRPTKSTPYSTHHYQSNLLTPS----RISKQRSANFSAHSQKSNTSNKISSTVFTPP 253
T +TP+ +H + L+PS R+ +NF + + + SN + + + P
Sbjct: 822 DESASRT-TTPHGYYHVKQ--LSPSNMQHRLDNTTPSNFDFSNVQPSNSNPVPNGRYHPL 878
Query: 252 TPESV 238
TP S+
Sbjct: 879 TPSSM 883
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -2
Query: 483 SPFNIPISPTNNIS-PSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRISKQRSANFSAH 307
+P +PT + P+ TTP+ T +TP +T + TP+ + + + +
Sbjct: 202 TPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTT--TTP 259
Query: 306 SQKSNTSNKISSTVFTPPT 250
+ + T+ K ++T TP T
Sbjct: 260 TTTTQTTTKPTTTTTTPTT 278
>Z81037-1|CAB02745.1| 819|Caenorhabditis elegans Hypothetical
protein C17E4.2 protein.
Length = 819
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/68 (22%), Positives = 37/68 (54%)
Frame = -2
Query: 684 DVIQFQRQHRRRLLSYLLQSTKKFYAARNELKRVTEMCQKQHTQLKEYHKRIKALETQLA 505
D ++ + + ++ LL+ +KF + E KR+ E C+K+ +L+E ++ + T+L
Sbjct: 470 DELRVTKMESGKDMAALLRDFEKFAISDKESKRMVEGCKKKIEELEEQNRFLTVEITKLL 529
Query: 504 NQSSRQVS 481
++ ++
Sbjct: 530 DEKEAMLN 537
>Z68120-1|CAA92199.3| 711|Caenorhabditis elegans Hypothetical
protein T24C2.1 protein.
Length = 711
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/86 (29%), Positives = 39/86 (45%)
Frame = -2
Query: 561 HTQLKEYHKRIKALETQLANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPTKSTPYS 382
H +L + K K+ E +S V +P N+ F TT S K+ T +TPY+
Sbjct: 501 HPELDTFEKPKKSFE-----KSHSLVQMTETTTAPAANLK--FYSTTASTKKLTPTTPYA 553
Query: 381 THHYQSNLLTPSRISKQRSANFSAHS 304
+ +S+ TP+ +K S HS
Sbjct: 554 SAPPESSTQTPNS-TKPTSIRNVTHS 578
>AL033514-4|CAA22094.2| 827|Caenorhabditis elegans Hypothetical
protein Y75B8A.3 protein.
Length = 827
Score = 29.9 bits (64), Expect = 2.2
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = -2
Query: 522 LETQLANQSSRQVSPFN-IPISPTNNISPSFIQTTPSCKRPTKSTPYSTHHYQSNL-LTP 349
L Q QS S +N P PTN P TTP +T Y YQ+N P
Sbjct: 244 LFNQAIVQSGSVYSCYNPTPAVPTN---PQVQVTTPRPMYDQSNTGYGNAGYQNNYGYQP 300
Query: 348 SRISKQRSANFSAHSQKSNTSNKISSTV 265
I+ S N SA++Q + S +++ T+
Sbjct: 301 QPITSTSSYN-SANAQYDDPSQQLAQTL 327
>AF218866-1|AAF67103.1| 711|Caenorhabditis elegans transmembrane
protein RAM-5 protein.
Length = 711
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/86 (29%), Positives = 39/86 (45%)
Frame = -2
Query: 561 HTQLKEYHKRIKALETQLANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPTKSTPYS 382
H +L + K K+ E +S V +P N+ F TT S K+ T +TPY+
Sbjct: 501 HPELDTFEKPKKSFE-----KSHSLVQMTETTTAPAANLK--FYSTTASTKKLTPTTPYA 553
Query: 381 THHYQSNLLTPSRISKQRSANFSAHS 304
+ +S+ TP+ +K S HS
Sbjct: 554 SAPPESSTQTPNS-TKPTSIRNVTHS 578
>Z93387-5|CAB54299.3| 134|Caenorhabditis elegans Hypothetical
protein T02E9.5 protein.
Length = 134
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 125 QYNTTGDIFCELFDEYPDSSLESFRKNHYRFFKKLLYPTDSGVGGVKT 268
QY TGDI+C F D + + + + PTD G G+ T
Sbjct: 40 QYAPTGDIYCSQFAMCCDQQFDPNNGDKCKVKESECQPTDDGRSGLGT 87
>Z83114-4|CAB05554.4| 739|Caenorhabditis elegans Hypothetical
protein K09B11.10 protein.
Length = 739
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 78 NS*LFLSTNIFDPSRYSTILRVIFSASCLTNILTL-HWSRSG 200
+S LFL+ + F P YST+ + S T L+L +W ++G
Sbjct: 304 SSFLFLAVDSFSPRPYSTLTSQVIPCSQRTTSLSLKYWMKTG 345
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.1 bits (62), Expect = 3.9
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = -2
Query: 510 LANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPTKST--PYSTHHYQSNLLTPSRIS 337
+A SR+ S N P PT+ I+ + T TK T ST H S + T S+
Sbjct: 653 VAKSKSRKKSLKNTPSVPTSTITTTSTTTNKPTSTSTKQTTSSSSTEHSPSPMATSSQ-- 710
Query: 336 KQRSANFSAHSQKSNTSNKISSTV 265
K+ S + + +K+ +S TV
Sbjct: 711 KRDSISNTDVKKKTPYGQPMSGTV 734
>Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical
protein R10E11.5 protein.
Length = 444
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/89 (19%), Positives = 40/89 (44%)
Frame = -2
Query: 750 PDMKQEIQDYFTDPEELIKKSCDVIQFQRQHRRRLLSYLLQSTKKFYAARNELKRVTEMC 571
P K+E + T ++ I D++Q + + + + ++ KK +N+ K E+
Sbjct: 131 PAKKEENRHVITSKDDDIASEPDIVQDREEFMNEMKKHKIELEKKKSLGKNDSKTTIEIP 190
Query: 570 QKQHTQLKEYHKRIKALETQLANQSSRQV 484
+ + ++ H + A ++A S + V
Sbjct: 191 TPKAAETQQEHVKF-AHAPEIAGNSQKAV 218
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 3.9
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = -2
Query: 483 SPFNIPISPTNN-ISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRISKQRSANFSAH 307
SP P SP+ + SPS+ T+PS + S S+ Y + + S S + S +
Sbjct: 1623 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTY 1682
Query: 306 SQKSNTSNKISSTVFTPPTP 247
S S T + S T ++P +P
Sbjct: 1683 SPTSPTYSPTSPT-YSPTSP 1701
Score = 27.9 bits (59), Expect = 9.0
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = -2
Query: 483 SPFNIPISPTNN-ISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRISKQRSANFSAH 307
SP P SP+ + SPS+ T+PS + S S+ Y + S S S +
Sbjct: 1630 SPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTY 1689
Query: 306 SQKSNTSNKISSTVFTPPTP 247
S S T + S T ++P +P
Sbjct: 1690 SPTSPTYSPTSPT-YSPTSP 1708
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 3.9
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = -2
Query: 483 SPFNIPISPTNN-ISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRISKQRSANFSAH 307
SP P SP+ + SPS+ T+PS + S S+ Y + + S S + S +
Sbjct: 1630 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTY 1689
Query: 306 SQKSNTSNKISSTVFTPPTP 247
S S T + S T ++P +P
Sbjct: 1690 SPTSPTYSPTSPT-YSPTSP 1708
Score = 27.9 bits (59), Expect = 9.0
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = -2
Query: 483 SPFNIPISPTNN-ISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRISKQRSANFSAH 307
SP P SP+ + SPS+ T+PS + S S+ Y + S S S +
Sbjct: 1637 SPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTY 1696
Query: 306 SQKSNTSNKISSTVFTPPTP 247
S S T + S T ++P +P
Sbjct: 1697 SPTSPTYSPTSPT-YSPTSP 1715
>AF045642-11|AAC02584.1| 443|Caenorhabditis elegans Hypothetical
protein C17H12.5 protein.
Length = 443
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 536 KELRRWKRN*QTNRADKYPL 477
K+ + WK+N Q N+AD YP+
Sbjct: 172 KDCQLWKKNLQMNQADNYPI 191
>U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase
protein 25, isoformb protein.
Length = 1130
Score = 28.7 bits (61), Expect = 5.2
Identities = 24/105 (22%), Positives = 49/105 (46%)
Frame = -2
Query: 567 KQHTQLKEYHKRIKALETQLANQSSRQVSPFNIPISPTNNISPSFIQTTPSCKRPTKSTP 388
K++ + + + + +T A ++ V+P +P +PT I PS P+ +P +
Sbjct: 408 KKNQKFGTFPRSVVFAQTNNAVAAATAVTPQKVPTAPTIRIPPS--HPPPAPLKPLNNNT 465
Query: 387 YSTHHYQSNLLTPSRISKQRSANFSAHSQKSNTSNKISSTVFTPP 253
++ + ++ S+IS + N S S SN+ ++ V PP
Sbjct: 466 KTSLNDRT-----SKISMPVAGNDSVISGGSNSIGLANTYVMEPP 505
>U40424-1|AAA81456.2| 461|Caenorhabditis elegans Twik family of
potassium channelsprotein 18 protein.
Length = 461
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = -2
Query: 726 DYFTDPEE---LIKKSCDVIQFQRQHRRRLLSYLLQSTKKFYAARNELKRVTEMCQKQHT 556
D DPEE KKS D + + +R L YLL ++K A+ K++ K T
Sbjct: 334 DEHVDPEEDPENNKKSFDAVISRMNWSKRGLYYLLPDSQKKELAKQSEKKMGRKSIKIQT 393
Query: 555 --QLKEYHKRIKALETQLANQSSRQVSP 478
L E R + L+ +L N+ + +P
Sbjct: 394 DNDLLETLIREEILKAELNNEMHKYTAP 421
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 621 KKFYAARNELKRVTEMCQKQHTQLKEYHKRIKALETQLANQSSRQVSPFN 472
K+ A NEL ++ EM ++H QLK H + +L + +++ N
Sbjct: 817 KECEARMNELTKIHEMLMEEHDQLKVDHLHTEEEVERLKEKMRKELEKLN 866
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 621 KKFYAARNELKRVTEMCQKQHTQLKEYHKRIKALETQLANQSSRQVSPFN 472
K+ A NEL ++ EM ++H QLK H + +L + +++ N
Sbjct: 817 KECEARMNELTKIHEMLMEEHDQLKVDHLHTEEEVERLKEKMRKELEKLN 866
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 621 KKFYAARNELKRVTEMCQKQHTQLKEYHKRIKALETQLANQSSRQVSPFN 472
K+ A NEL ++ EM ++H QLK H + +L + +++ N
Sbjct: 577 KECEARMNELTKIHEMLMEEHDQLKVDHLHTEEEVERLKEKMRKELEKLN 626
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 621 KKFYAARNELKRVTEMCQKQHTQLKEYHKRIKALETQLANQSSRQVSPFN 472
K+ A NEL ++ EM ++H QLK H + +L + +++ N
Sbjct: 817 KECEARMNELTKIHEMLMEEHDQLKVDHLHTEEEVERLKEKMRKELEKLN 866
>AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical
protein Y43F4B.6 protein.
Length = 1083
Score = 28.7 bits (61), Expect = 5.2
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = -2
Query: 759 KLVPDMKQEIQDYFTDPEELIKKSCDVIQFQRQHRRRLLSYLLQSTKKFYAARNELKRVT 580
K++ DMK+ +Q+ EE +KK+ D ++ + R RLL KF A + + +R
Sbjct: 579 KVLNDMKK-LQETRRRMEETLKKTEDELKNLKTQRLRLLREQRAEASKFQAFKQKHER-- 635
Query: 579 EMCQ-KQHTQLKE 544
EM Q K Q +E
Sbjct: 636 EMAQMKSKLQKRE 648
>AF083650-1|AAC32861.1| 461|Caenorhabditis elegans potassium
channel subunit n2P18 protein.
Length = 461
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = -2
Query: 726 DYFTDPEE---LIKKSCDVIQFQRQHRRRLLSYLLQSTKKFYAARNELKRVTEMCQKQHT 556
D DPEE KKS D + + +R L YLL ++K A+ K++ K T
Sbjct: 334 DEHVDPEEDPENNKKSFDAVISRMNWSKRGLYYLLPDSQKKELAKQSEKKMGRKSIKIQT 393
Query: 555 --QLKEYHKRIKALETQLANQSSRQVSP 478
L E R + L+ +L N+ + +P
Sbjct: 394 DNDLLETLIREEILKAELNNEMHKYTAP 421
>AC024790-3|AAF60637.1| 446|Caenorhabditis elegans Hypothetical
protein Y47D7A.6 protein.
Length = 446
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 468 PISPTNNISPSFIQTTPSCKRPTKSTP 388
PI+PT +PS TTPS P+ + P
Sbjct: 328 PIAPTYETTPSSYDTTPSYSVPSYTAP 354
>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
protein F40G12.3 protein.
Length = 1099
Score = 27.9 bits (59), Expect = 9.0
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Frame = -2
Query: 519 ETQLANQSSRQVSPFNIPISPTNNISPSFIQTTPS-----CKRPTKSTPYSTHHYQ---- 367
E + ++ + S +I PT+ ISPS PS R T + ST ++Q
Sbjct: 583 EGDQSTNTTIKTSTVSIKNQPTDRISPSDNSGDPSSSKKYTSRRTSTDAESTTNHQNPSE 642
Query: 366 SNLLTPSRISKQRSANFSAHSQKSNTSNKISSTVFT 259
S L S +S S ++KS T + ++TV T
Sbjct: 643 STLAASSGVSSTTVTQSSIPTEKSTTVDYTATTVST 678
>Z68342-9|CAD91630.2| 626|Caenorhabditis elegans Hypothetical
protein F38E11.12 protein.
Length = 626
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 671 FKGSIEGDCSLIYYNRQKSFTRHAMN 594
F+G I GD +LI++N + RH N
Sbjct: 487 FEGEILGDVNLIWFNNHLNHNRHQHN 512
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/74 (25%), Positives = 31/74 (41%)
Frame = -2
Query: 468 PISPTNNISPSFIQTTPSCKRPTKSTPYSTHHYQSNLLTPSRISKQRSANFSAHSQKSNT 289
P+ TN+++PS TT T S T + PS ++ + SQ T
Sbjct: 564 PVVTTNSVTPSTGTTTVPVPTTTGSPTTQTTAPVTKPTVPSSTTQTAPPVTTPTSQPPVT 623
Query: 288 SNKISSTVFTPPTP 247
+ + +T+ TP P
Sbjct: 624 TTSLLTTLTTPTVP 637
>AL110499-3|CAE18038.1| 437|Caenorhabditis elegans Hypothetical
protein Y62F5A.10 protein.
Length = 437
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -2
Query: 411 KRPTKSTPYSTHHYQSNLLTPSRISKQRSANFSAHSQKSNTS-NKISS 271
K+P K + HH+Q + + SK +KSNT+ NK +S
Sbjct: 6 KKPKKHQHHHHHHHQKGSVALPKKSKNNRKKKITRKEKSNTALNKTAS 53
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,489,304
Number of Sequences: 27780
Number of extensions: 361054
Number of successful extensions: 1339
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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