Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12c02
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.83 
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    24   1.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   1.9  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   7.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 327 SANFSAHSQKSNTSNKISSTVFTPPT 250
           S N ++ + + NTSN  S   F PPT
Sbjct: 613 SNNQTSSASRENTSNTTSMESFKPPT 638


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 345 RISKQRSANFSAHSQ-KSNTSNKISSTVFTPPTPESV 238
           ++  +RS + S  S+ KSNTSN   + + +   PE +
Sbjct: 74  KLGSERSKSRSPDSRDKSNTSNTSKTIILSDKGPEGI 110


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/57 (19%), Positives = 26/57 (45%)
 Frame = -2

Query: 669 QRQHRRRLLSYLLQSTKKFYAARNELKRVTEMCQKQHTQLKEYHKRIKALETQLANQ 499
           Q  H R     +    K+ Y++ N L+    +  +QH++ ++  K ++ +  +   Q
Sbjct: 23  QNVHTRPSKEPICNICKRVYSSLNSLRNHKSIYHRQHSKNEQQRKEMEQMREREREQ 79


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 510 LANQSSRQVSPFNIPISPTNNISPSFIQTTPS 415
           L N  +   + F +P    N I+P F   +PS
Sbjct: 33  LMNTMTHTTNAFCLPFCGPNVINPFFCDMSPS 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,220
Number of Sequences: 438
Number of extensions: 4123
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)