Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b24
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos...    32   0.11 
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    28   1.3  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   5.4  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   5.4  
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch...    25   9.4  

>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 16/47 (34%), Positives = 31/47 (65%)
 Frame = -2

Query: 176 EMEERQQKHAEYLLSIDERKRGYNSMVEVKEPTEDEMEAYRMKRKRD 36
           ++EE+Q KH E L   DE ++ +  +V  + PT D++EA  ++R+++
Sbjct: 166 KIEEQQHKHLENLG--DEVEQDWKPLVIEQIPTRDDVEAILLERRKN 210


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 409  VDNFLSSDTGSTTVFPASPTQYDIFIKE*QHL*PHWPSRQYEPQTVVW 552
            ++NFLS    S+   PA   +Y+   +   +  PHW  +Q E Q  +W
Sbjct: 1192 IENFLSPSFKSS--IPAIAKKYNFEYEYITYNWPHWLRKQEEKQREIW 1237


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 749 QRYKSQVKQSILEKYGGEEHLQSVPREL 666
           Q  +  VK+   EKYG   H+  VP EL
Sbjct: 527 QELEQDVKEECDEKYGKVVHIAVVPNEL 554


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 592 SCFSAPLTSVPSLL*RVNTSVWASSSSLGTDWRCSSPPYFS 714
           S F++  +S  + L   NTSV  + +  G+    SSPP++S
Sbjct: 310 SSFTSSSSSYTTTLTASNTSVTYTGTGTGSATFTSSPPFYS 350



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 592 SCFSAPLTSVPSLL*RVNTSVWASSSSLGTDWRCSSPPYFS 714
           S F++  +S  + L   NTS+  + +  G+    SSPP++S
Sbjct: 364 SSFTSSNSSYTTTLTASNTSITYTGTGTGSATFTSSPPFYS 404


>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 213

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 576 IFTLGKLLLCPADERAVPVVAGEHF 650
           IFTLG+L + PAD+  +   A E F
Sbjct: 149 IFTLGRLDIMPADDSTLKNEAKEFF 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,386
Number of Sequences: 5004
Number of extensions: 43851
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)