Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b24
         (789 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC010634-1|AAH10634.1|  586|Homo sapiens SLU7 splicing factor ho...   166   7e-41
AF101074-1|AAD13774.1|  586|Homo sapiens step II splicing factor...   166   7e-41
U02609-1|AAA18945.1|  519|Homo sapiens transducin-like protein p...    32   2.7  
Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.            31   3.6  
X74955-1|CAA52910.1|  622|Homo sapiens mucin protein.                  31   3.6  
AF253321-1|AAF64523.1|  716|Homo sapiens cervical mucin MUC5B pr...    31   3.6  
X74370-1|CAA52408.1|  543|Homo sapiens mucin protein.                  31   4.7  

>BC010634-1|AAH10634.1|  586|Homo sapiens SLU7 splicing factor
           homolog (S. cerevisiae) protein.
          Length = 586

 Score =  166 bits (404), Expect = 7e-41
 Identities = 69/116 (59%), Positives = 90/116 (77%)
 Frame = -2

Query: 788 KLQMLQAHYKRDQQRYKSQVKQSILEKYGGEEHLQSVPRELLLAQTEVFTRYNRDGTLVS 609
           KL++L   +K  ++ +K Q K+SILEKYGG+EHL + P ELLLAQTE +  Y+R GT++ 
Sbjct: 349 KLELLYKSFKVKKEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIK 408

Query: 608 GAEKQLAKSKYEEDALINNHTTVWGSYWRDGQWGYKCCHSFIKMSYCVGEAGKTVV 441
           G E+ +A SKYEED  I+NHT +WGSYW++G+WGYKCCHSF K SYC GEAGK +V
Sbjct: 409 GQERAVACSKYEEDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIV 464



 Score = 77.8 bits (183), Expect = 4e-14
 Identities = 35/57 (61%), Positives = 43/57 (75%)
 Frame = -2

Query: 182 ALEMEERQQKHAEYLLSIDERKRGYNSMVEVKEPTEDEMEAYRMKRKRDEDPMSQFL 12
           AL  EE +  H +  + IDERKR YNSM E +EPTE+EMEAYRMKR+R +DPM+ FL
Sbjct: 528 ALNAEEARLLHVKETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFL 584


>AF101074-1|AAD13774.1|  586|Homo sapiens step II splicing factor
           SLU7 protein.
          Length = 586

 Score =  166 bits (404), Expect = 7e-41
 Identities = 69/116 (59%), Positives = 90/116 (77%)
 Frame = -2

Query: 788 KLQMLQAHYKRDQQRYKSQVKQSILEKYGGEEHLQSVPRELLLAQTEVFTRYNRDGTLVS 609
           KL++L   +K  ++ +K Q K+SILEKYGG+EHL + P ELLLAQTE +  Y+R GT++ 
Sbjct: 349 KLELLYKSFKVKKEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIK 408

Query: 608 GAEKQLAKSKYEEDALINNHTTVWGSYWRDGQWGYKCCHSFIKMSYCVGEAGKTVV 441
           G E+ +A SKYEED  I+NHT +WGSYW++G+WGYKCCHSF K SYC GEAGK +V
Sbjct: 409 GQERAVACSKYEEDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIV 464



 Score = 77.8 bits (183), Expect = 4e-14
 Identities = 35/57 (61%), Positives = 43/57 (75%)
 Frame = -2

Query: 182 ALEMEERQQKHAEYLLSIDERKRGYNSMVEVKEPTEDEMEAYRMKRKRDEDPMSQFL 12
           AL  EE +  H +  + IDERKR YNSM E +EPTE+EMEAYRMKR+R +DPM+ FL
Sbjct: 528 ALNAEEARLLHVKETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFL 584


>U02609-1|AAA18945.1|  519|Homo sapiens transducin-like protein
           protein.
          Length = 519

 Score = 31.9 bits (69), Expect = 2.7
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -3

Query: 688 SSPYPGSCCWPRPK-CSPATTGTARSSAGQR 599
           SS  P + CWPRP+  +P+++G +R+SA  R
Sbjct: 413 SSSLPWTRCWPRPQLMAPSSSGHSRTSAVSR 443


>Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.
          Length = 3570

 Score = 31.5 bits (68), Expect = 3.6
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -3

Query: 694  STSSPYPGSCCWPRPKCSPATTGTARSSAGQRSNLPR 584
            +T S  PG+   P+   SPATT TA SS    S+ PR
Sbjct: 2884 ATPSSTPGTAPPPKVLTSPATTPTATSSKATSSSSPR 2920


>X74955-1|CAA52910.1|  622|Homo sapiens mucin protein.
          Length = 622

 Score = 31.5 bits (68), Expect = 3.6
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -3

Query: 694 STSSPYPGSCCWPRPKCSPATTGTARSSAGQRSNLPR 584
           +T S  PG+   P+   SPATT TA SS    S+ PR
Sbjct: 98  ATPSSTPGTAPPPKVLTSPATTPTATSSKATSSSSPR 134


>AF253321-1|AAF64523.1|  716|Homo sapiens cervical mucin MUC5B
           protein.
          Length = 716

 Score = 31.5 bits (68), Expect = 3.6
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -3

Query: 694 STSSPYPGSCCWPRPKCSPATTGTARSSAGQRSNLPR 584
           +T S  PG+   P+   SPATT TA SS    S+ PR
Sbjct: 358 ATPSSTPGTAPPPKVLTSPATTPTATSSKATSSSSPR 394


>X74370-1|CAA52408.1|  543|Homo sapiens mucin protein.
          Length = 543

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 694 STSSPY-PGSCCWPRPKCSPATTGTARSSAGQRSNLPR 584
           ST++P  PG+   P+   SPATT TA SS    S+ PR
Sbjct: 48  STATPSTPGTAPPPKVLTSPATTPTATSSKATSSSSPR 85


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,632,083
Number of Sequences: 237096
Number of extensions: 1730831
Number of successful extensions: 5291
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5288
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)