Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12b24
(789 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014297-4306|AAF56845.2| 574|Drosophila melanogaster CG1420-PA... 157 2e-38
AY061470-1|AAL29018.1| 574|Drosophila melanogaster LD43674p pro... 155 9e-38
BT023778-1|AAZ41787.1| 2016|Drosophila melanogaster LD21067p pro... 31 1.4
AY128444-1|AAM75037.1| 1332|Drosophila melanogaster LD21041p pro... 31 1.4
AE014134-1407|AAF52607.1| 2016|Drosophila melanogaster CG8552-PA... 31 1.4
AE014297-109|AAF52120.1| 701|Drosophila melanogaster CG1078-PA ... 29 7.2
AY058551-1|AAL13780.1| 806|Drosophila melanogaster LD24714p pro... 29 9.6
AF132160-1|AAD34748.1| 741|Drosophila melanogaster unknown prot... 29 9.6
AE014134-539|AAF51161.1| 757|Drosophila melanogaster CG3542-PB,... 29 9.6
AE014134-538|AAF51160.1| 806|Drosophila melanogaster CG3542-PA,... 29 9.6
AE013599-2197|AAF58057.1| 741|Drosophila melanogaster CG8431-PA... 29 9.6
>AE014297-4306|AAF56845.2| 574|Drosophila melanogaster CG1420-PA
protein.
Length = 574
Score = 157 bits (380), Expect = 2e-38
Identities = 66/109 (60%), Positives = 83/109 (76%)
Frame = -2
Query: 788 KLQMLQAHYKRDQQRYKSQVKQSILEKYGGEEHLQSVPRELLLAQTEVFTRYNRDGTLVS 609
KL++LQ Y++ ++++KS K I+EKYGGEEHLQ P+ LLLAQTE + Y+R G ++
Sbjct: 320 KLELLQKEYEQKKEQFKSSTKTHIVEKYGGEEHLQVPPKSLLLAQTEEYIEYSRSGKVIK 379
Query: 608 GAEKQLAKSKYEEDALINNHTTVWGSYWRDGQWGYKCCHSFIKMSYCVG 462
G EK A+S YEED INNHTTVWGS+W G+WGYKCC SFIK SYCVG
Sbjct: 380 GVEKPKARSIYEEDVYINNHTTVWGSFWNAGRWGYKCCKSFIKNSYCVG 428
Score = 59.7 bits (138), Expect = 4e-09
Identities = 25/40 (62%), Positives = 32/40 (80%)
Frame = -2
Query: 131 IDERKRGYNSMVEVKEPTEDEMEAYRMKRKRDEDPMSQFL 12
+D+RKR YNSM +VK PTEDE+E ++ KR R EDPM QF+
Sbjct: 535 LDDRKRAYNSMYDVKAPTEDEIEEWKKKRPRAEDPMLQFM 574
>AY061470-1|AAL29018.1| 574|Drosophila melanogaster LD43674p
protein.
Length = 574
Score = 155 bits (375), Expect = 9e-38
Identities = 66/109 (60%), Positives = 82/109 (75%)
Frame = -2
Query: 788 KLQMLQAHYKRDQQRYKSQVKQSILEKYGGEEHLQSVPRELLLAQTEVFTRYNRDGTLVS 609
KL++LQ Y++ ++++KS K I+EKYGGEEHLQ P+ LLLAQTE + Y+R G ++
Sbjct: 320 KLELLQKEYEQKKEQFKSSTKTHIVEKYGGEEHLQVPPKSLLLAQTEEYIEYSRSGKVIK 379
Query: 608 GAEKQLAKSKYEEDALINNHTTVWGSYWRDGQWGYKCCHSFIKMSYCVG 462
G EK A S YEED INNHTTVWGS+W G+WGYKCC SFIK SYCVG
Sbjct: 380 GVEKPKACSIYEEDVYINNHTTVWGSFWNAGRWGYKCCKSFIKNSYCVG 428
Score = 59.7 bits (138), Expect = 4e-09
Identities = 25/40 (62%), Positives = 32/40 (80%)
Frame = -2
Query: 131 IDERKRGYNSMVEVKEPTEDEMEAYRMKRKRDEDPMSQFL 12
+D+RKR YNSM +VK PTEDE+E ++ KR R EDPM QF+
Sbjct: 535 LDDRKRAYNSMYDVKAPTEDEIEEWKKKRPRAEDPMLQFM 574
>BT023778-1|AAZ41787.1| 2016|Drosophila melanogaster LD21067p protein.
Length = 2016
Score = 31.5 bits (68), Expect = 1.4
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +1
Query: 400 SVLVDNFLSSDTGSTTVFPASPTQYDIFIKE*QHL*PHWPSRQYEPQTVVWLFIRASSSY 579
S L++ L+ D ST + P +YD+ IKE +W + E + W + S Y
Sbjct: 1400 SALLETSLNLDD-STLIIPVEGGRYDVNIKERTKTPVYWEGKAIEVRRCSWFYKGVDSKY 1458
Query: 580 L 582
+
Sbjct: 1459 V 1459
>AY128444-1|AAM75037.1| 1332|Drosophila melanogaster LD21041p
protein.
Length = 1332
Score = 31.5 bits (68), Expect = 1.4
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +1
Query: 400 SVLVDNFLSSDTGSTTVFPASPTQYDIFIKE*QHL*PHWPSRQYEPQTVVWLFIRASSSY 579
S L++ L+ D ST + P +YD+ IKE +W + E + W + S Y
Sbjct: 716 SALLETSLNLDD-STLIIPVEGGRYDVNIKERTKTPVYWEGKAIEVRRCSWFYKGVDSKY 774
Query: 580 L 582
+
Sbjct: 775 V 775
>AE014134-1407|AAF52607.1| 2016|Drosophila melanogaster CG8552-PA
protein.
Length = 2016
Score = 31.5 bits (68), Expect = 1.4
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +1
Query: 400 SVLVDNFLSSDTGSTTVFPASPTQYDIFIKE*QHL*PHWPSRQYEPQTVVWLFIRASSSY 579
S L++ L+ D ST + P +YD+ IKE +W + E + W + S Y
Sbjct: 1400 SALLETSLNLDD-STLIIPVEGGRYDVNIKERTKTPVYWEGKAIEVRRCSWFYKGVDSKY 1458
Query: 580 L 582
+
Sbjct: 1459 V 1459
>AE014297-109|AAF52120.1| 701|Drosophila melanogaster CG1078-PA
protein.
Length = 701
Score = 29.1 bits (62), Expect = 7.2
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -2
Query: 167 ERQQKHAEYLLSIDERKRGYNSMVEVKEPTEDEMEAYRMKRKRDEDP 27
ER+++ E LL D+ ++ + M+ + E Y +K+K + DP
Sbjct: 516 ERRRREKEKLLKKDQLRKDFLDMLRERHDIERHTRWYDIKKKFEADP 562
>AY058551-1|AAL13780.1| 806|Drosophila melanogaster LD24714p
protein.
Length = 806
Score = 28.7 bits (61), Expect = 9.6
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = -2
Query: 134 SIDERKRGYNSMVEVKEPTEDEMEAYRMKRKRDEDPMSQFL 12
+++ERK+ +N+ K +DE E R+K K+ ++ + QFL
Sbjct: 269 NLNERKQTFNAYKTQK--IKDEREESRLKAKKAKEDLEQFL 307
>AF132160-1|AAD34748.1| 741|Drosophila melanogaster unknown
protein.
Length = 741
Score = 28.7 bits (61), Expect = 9.6
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = -2
Query: 740 KSQVKQSILEKYGGEEHLQSV-PRELLLAQTEVFTRYNRDGTLVSGAE-KQLAKSKYEE 570
K + KQ+ E +E + V P+E+ LA+TE ++ ++ +G E K+++K + ++
Sbjct: 661 KERKKQAAAEAAAAKEAQRRVNPKEMFLAETEKYSAFDENGLPTHDKEGKEVSKGQIKK 719
>AE014134-539|AAF51161.1| 757|Drosophila melanogaster CG3542-PB,
isoform B protein.
Length = 757
Score = 28.7 bits (61), Expect = 9.6
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = -2
Query: 134 SIDERKRGYNSMVEVKEPTEDEMEAYRMKRKRDEDPMSQFL 12
+++ERK+ +N+ K +DE E R+K K+ ++ + QFL
Sbjct: 220 NLNERKQTFNAYKTQK--IKDEREESRLKAKKAKEDLEQFL 258
>AE014134-538|AAF51160.1| 806|Drosophila melanogaster CG3542-PA,
isoform A protein.
Length = 806
Score = 28.7 bits (61), Expect = 9.6
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = -2
Query: 134 SIDERKRGYNSMVEVKEPTEDEMEAYRMKRKRDEDPMSQFL 12
+++ERK+ +N+ K +DE E R+K K+ ++ + QFL
Sbjct: 269 NLNERKQTFNAYKTQK--IKDEREESRLKAKKAKEDLEQFL 307
>AE013599-2197|AAF58057.1| 741|Drosophila melanogaster CG8431-PA
protein.
Length = 741
Score = 28.7 bits (61), Expect = 9.6
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = -2
Query: 740 KSQVKQSILEKYGGEEHLQSV-PRELLLAQTEVFTRYNRDGTLVSGAE-KQLAKSKYEE 570
K + KQ+ E +E + V P+E+ LA+TE ++ ++ +G E K+++K + ++
Sbjct: 661 KERKKQAAAEAAAAKEAQRRVNPKEMFLAETEKYSAFDENGLPTHDKEGKEVSKGQIKK 719
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,374,542
Number of Sequences: 53049
Number of extensions: 527005
Number of successful extensions: 2264
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2264
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3654740856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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