Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12b24
(789 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71181-6|CAA94899.1| 647|Caenorhabditis elegans Hypothetical pr... 136 2e-32
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 29 5.0
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass... 29 5.0
Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical pr... 28 8.8
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 28 8.8
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 28 8.8
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 28 8.8
U23449-4|AAC24299.2| 534|Caenorhabditis elegans Hypothetical pr... 28 8.8
>Z71181-6|CAA94899.1| 647|Caenorhabditis elegans Hypothetical
protein K07C5.6 protein.
Length = 647
Score = 136 bits (329), Expect = 2e-32
Identities = 58/132 (43%), Positives = 88/132 (66%)
Frame = -2
Query: 788 KLQMLQAHYKRDQQRYKSQVKQSILEKYGGEEHLQSVPRELLLAQTEVFTRYNRDGTLVS 609
KL+ L+ Y++++ K++ ++ +L+KYGG EH++ ELLLAQTE + YNR G ++
Sbjct: 325 KLEALKKEYEKEKSTLKNETQKELLDKYGGGEHMERPADELLLAQTESYIEYNRKGKVIK 384
Query: 608 GAEKQLAKSKYEEDALINNHTTVWGSYWRDGQWGYKCCHSFIKMSYCVGEAGKTVVLPVS 429
G EK S+++ED NHT+V+GS+WR+G+WGYKCCH F+K SYC G+ G + S
Sbjct: 385 GKEKVAISSRFKEDIYPQNHTSVFGSFWREGRWGYKCCHQFVKNSYCTGKQG--IEAETS 442
Query: 428 DDKKLSTSTDGI 393
K +TS + I
Sbjct: 443 AAKGTTTSNEEI 454
Score = 35.5 bits (78), Expect = 0.044
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -2
Query: 173 MEERQQKHAEYLLSIDERKRG--YNSMVEVKEPTEDEMEAYRMKRKRDEDPMSQFL 12
M++ +++ AE + + E RG YN+ P E EMEAYR+ DPM+ ++
Sbjct: 582 MKKAKREKAEGMKAAREGDRGRKYNTDYSNTAPNEKEMEAYRVTSVHSADPMAAYM 637
>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
protein Y49E10.19 protein.
Length = 1159
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 125 ERKRGYNSMVEVKEPTEDEMEAYRMKRKRDEDPMSQF 15
E+ R ++E + EDE E Y + + D+D +QF
Sbjct: 652 EKNRPPAEVIEEETENEDESEPYEPEEEEDDDATTQF 688
>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 59 protein.
Length = 1592
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 503 KCCHSFIKMSYCVGEAGKTVVLPVSDDKKLSTSTD 399
+CC+S ++ C+ E ++V +S KKL S D
Sbjct: 47 ECCNSTLRKEKCIAEFVESVKTVISKAKKLRLSRD 81
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/41 (24%), Positives = 26/41 (63%)
Frame = -2
Query: 788 KLQMLQAHYKRDQQRYKSQVKQSILEKYGGEEHLQSVPREL 666
+++ L+AHY+R Q+ + V+Q +E G + ++ + +++
Sbjct: 694 EMKQLEAHYERAQKMLQDNVEQMNVENRGLRDEIEKLSQQM 734
>Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical
protein ZK265.7 protein.
Length = 370
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = -2
Query: 176 EMEERQQKHAEYLLSIDERKRGYNSMVE------VKEPTEDEMEAYRMKRKRDED 30
EM+E ++ E L +E S ++ +E E+E E YRM+R+R E+
Sbjct: 255 EMKEENERLREMLADEEEENSNDISDIDDDDGITAEEQREEERERYRMERRRAEE 309
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 694 STSSPYPGSCCWPRPKCSPATTGTARSSAGQRS 596
S++SP P S P P SPA+TG+ + +G S
Sbjct: 318 SSTSPAPSSS--PNPSSSPASTGSTITISGSSS 348
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 694 STSSPYPGSCCWPRPKCSPATTGTARSSAGQRS 596
S++SP P S P P SPA+TG+ + +G S
Sbjct: 525 SSTSPAPSSS--PNPSSSPASTGSTITISGSSS 555
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 694 STSSPYPGSCCWPRPKCSPATTGTARSSAGQRS 596
S++SP P S P P SPA+TG+ + +G S
Sbjct: 525 SSTSPAPSSS--PNPSSSPASTGSTITISGSSS 555
>U23449-4|AAC24299.2| 534|Caenorhabditis elegans Hypothetical
protein K06A1.5 protein.
Length = 534
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -2
Query: 170 EERQQKHAEYLLSI-DERKRG-YNSMVEVKEPTEDEMEAYRMKRKRDED 30
E+ QQ H +S+ DE +G N + V + E+ YRMK K D+D
Sbjct: 38 EQLQQSHRSRSVSVNDEHFKGNVNDRLAVMK--EEMANVYRMKSKNDQD 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,849,982
Number of Sequences: 27780
Number of extensions: 261751
Number of successful extensions: 1103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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