Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12b22
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 35 0.014
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 32 0.075
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 29 0.53
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 29 0.70
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 29 0.92
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 28 1.6
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.1
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 27 2.1
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 27 2.8
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 27 2.8
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 27 2.8
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 27 3.7
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 4.9
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 26 6.5
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 26 6.5
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 8.6
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 25 8.6
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 34.7 bits (76), Expect = 0.014
Identities = 26/118 (22%), Positives = 49/118 (41%)
Frame = -1
Query: 500 NGPRRNLKHYEAVSSLLFTMAIFILALGPLSLTIVNYGITFTFVVITLQQVCDKEDVQSS 321
N PR +L H ++S T + ++GP + V + L D + +
Sbjct: 18 NWPREHLVHRSLLASFSTTQRVLKCSVGPFRTSNVVFKSKEPKDNKPLDNKNDPKKTHNE 77
Query: 320 TIEGTNESKNDNDEKPKENQKEEADNIQTNDCDPCNENRIFDAFKNLQDKFDLTTMDN 147
TNES D+K K++ + N++++ + A K+ D+F+L +N
Sbjct: 78 DESHTNESLPSTDKKKKKDNDDFKQNLKSSSNKTEEKYSATQASKSKNDEFELGGEEN 135
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 32.3 bits (70), Expect = 0.075
Identities = 25/82 (30%), Positives = 36/82 (43%)
Frame = -1
Query: 419 GPLSLTIVNYGITFTFVVITLQQVCDKEDVQSSTIEGTNESKNDNDEKPKENQKEEADNI 240
GPLS V+ T + V+ Q C K++ + + + NDEKPK+ + N
Sbjct: 69 GPLSER-VHLNTTLDYEVLRGQNHCQKQNTTQTKTTISGSEQLFNDEKPKKIIYSKGGND 127
Query: 239 QTNDCDPCNENRIFDAFKNLQD 174
D D N N DA+ N D
Sbjct: 128 GKED-DLQNVNEPQDAYSNDHD 148
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 29.5 bits (63), Expect = 0.53
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -1
Query: 431 ILALGPLSLTIVNYGITFTFVVITLQQVCDKEDVQSSTIEGTNES--KNDNDEKPKENQK 258
I+ LG +L YG+ + F +++ + E ++++ E E K+D D+K N
Sbjct: 146 IVLLGRHALKEFLYGVRYGFSDDIMKRKLETEKLEANNKEEKEEKEGKDDKDDKEDSNDT 205
Query: 257 EEADNIQTNDCD 222
+ I N+ D
Sbjct: 206 KNDKKISKNEVD 217
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 29.1 bits (62), Expect = 0.70
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 362 TLQQVCDKEDVQSSTIEGTNESKNDNDEKPKENQKEEA 249
++Q + +KE + + TN+ ++D +E E QK+ A
Sbjct: 271 SVQDIAEKESLDADKELATNDQEDDEEENQAETQKDGA 308
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 28.7 bits (61), Expect = 0.92
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -1
Query: 353 QVCDKEDVQSSTIEGTNESKNDNDEKPKENQKEEADNIQTNDCDPCNENRIFD 195
+V K+DVQS +E ES D DE +EE +Q N D + + +FD
Sbjct: 1340 EVGSKDDVQSEEVENL-ESAGDEDE------EEEPSALQANGFDWTDGSTVFD 1385
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -1
Query: 344 DKEDVQSSTIEGTNESKNDNDEKPKENQKEEADNIQTNDCDPCNENRI 201
++ED + EG +E +N+NDE EN N+ + N + I
Sbjct: 254 EEEDDDENNDEGDDEDENENDELRSENGSPNPSAAVINEQENMNMSGI 301
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/58 (20%), Positives = 30/58 (51%)
Frame = -1
Query: 377 TFVVITLQQVCDKEDVQSSTIEGTNESKNDNDEKPKENQKEEADNIQTNDCDPCNENR 204
T + +T+ ++ E++ + + G + +++ND+ K ++ D+ + DP E R
Sbjct: 716 TSLPVTMDELGIDEEIMAE-LRGDEDDQDENDQVTKVEEEHMEDDDSVEEFDPIIEER 772
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 341 KEDVQSSTIEGTNESKNDNDEKPKENQKEE 252
+EDV+ T+E NE+ D ++ ++ + EE
Sbjct: 58 EEDVEMDTMEDENENDEDTEQTSEKKETEE 87
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 27.1 bits (57), Expect = 2.8
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = -1
Query: 314 EGTNESKNDNDEKPKENQKEE 252
+GT ++KN+ KP+ N+K++
Sbjct: 140 DGTTDAKNEETTKPENNEKDD 160
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -1
Query: 347 CDKEDVQSSTIEGTNESKNDNDEKPKENQKEEADNIQTNDCDPCNENRIFDAFKNLQD 174
CD E V+ + + S +DN+ K + N+ A ++ N P + FD F D
Sbjct: 727 CDFEPVKKRKADWDHLSNHDNEVKKENNRIRNASSLMEN---PRVSTKTFDNFTLTHD 781
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 2.8
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = -1
Query: 383 TFT---FVVITLQQVCDKEDVQSSTIEGTNESKNDNDEKPKENQKEEADNIQTNDCDPCN 213
TFT F +++ + D ++ + +EG E + + EKP+ + +E + + N +
Sbjct: 251 TFTMNKFADLSVLEEDDDDEDEDEELEGEKEEEEEEKEKPEISNYDETEG-KVNFSLEDS 309
Query: 212 ENRIFDAFKNLQDKFDLTT 156
E+ FD + D LTT
Sbjct: 310 ESLEFDEGSDDYDYAKLTT 328
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -1
Query: 344 DKEDVQSSTIEGTNESKNDNDEKPKENQKEEADNIQTNDCDP 219
++E+ + ++EG+ + +EKP E++++ QTN P
Sbjct: 377 EEEEEKLRSVEGSLNEELSEEEKPAESREQLESAEQTNGVKP 418
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -1
Query: 338 EDVQSSTI-EGTNESKNDNDEKPKENQKEEADNIQTNDCD-PCNENRIFDAFKNLQDKFD 165
E +TI +G + ++N+ D ++KE+ DN++ N+ + NE D + +D+ D
Sbjct: 67 ESPNDTTINKGEDGNENEVDNVNNNDKKEDEDNVEENEEEADANEEEEEDEEDDEEDEED 126
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -1
Query: 344 DKEDVQSS--TIEGTNESKNDNDEKPKENQKEEADNIQTNDCDPCNENRIFDAFKNLQD 174
D++D + + + + +N S N+ +KP E++ + + + + DP E D N+ D
Sbjct: 66 DEKDTKKAKRSFDESNLSTNEEADKPVESKFVKKLKVYSKNADPSVETLQKDRVSNVDD 124
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 344 DKEDVQSSTIEGTNESKNDNDEKPKENQKEEADNIQTND 228
++ED EG + + +ND K E ++EE +I+ +
Sbjct: 201 EEEDDGDGDGEGDGDGEGENDGKGSEEEEEEEIDIEEEE 239
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = -1
Query: 305 NESKNDNDEKPKENQKEEADNIQTNDCDPCNENRIFDAFKNLQDKFDLTTMDNL 144
++ +N+ DE+ E E ++ ND P ++ + NL+ LT M ++
Sbjct: 371 DDDENEEDEEDSEETSESEEDESVNDEKPQVIDQTNASLVNLRKSIYLTIMSSV 424
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/44 (20%), Positives = 25/44 (56%)
Frame = -1
Query: 362 TLQQVCDKEDVQSSTIEGTNESKNDNDEKPKENQKEEADNIQTN 231
T++++ +K + ++ K D +EKPK+ +++++ + N
Sbjct: 208 TVEELQNKGKEKQKELKKGKREKKDEEEKPKKKKQKKSSKKEKN 251
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,320
Number of Sequences: 5004
Number of extensions: 50549
Number of successful extensions: 200
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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