Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12b22
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0127 + 5777564-5779879 32 0.55
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 32 0.55
07_01_0463 + 3502708-3503535 30 1.7
12_01_0629 - 5183504-5184970 30 2.2
01_06_1488 + 37716986-37717076,37717424-37717558,37717755-377178... 30 2.2
08_02_0095 - 12285976-12286037,12286111-12287229,12287494-122886... 29 2.9
04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786 29 3.9
01_06_1485 + 37703696-37703815,37703970-37704044,37704598-377046... 29 3.9
07_01_0879 - 7290890-7291694,7291810-7291943,7292089-7292227,729... 29 5.1
05_03_0226 - 10645036-10646001,10646313-10646828,10646905-106472... 29 5.1
06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769... 28 6.8
07_03_0478 + 18556773-18556883,18557219-18557318,18557807-185595... 28 9.0
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 28 9.0
>03_02_0127 + 5777564-5779879
Length = 771
Score = 31.9 bits (69), Expect = 0.55
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -1
Query: 344 DKEDVQSSTIEGTNESKNDNDEKPKENQKEEADNIQTNDCDPCNENRIFDAFKN 183
++E +QSS + G +S +D K + E +N QT+D PC ++ A +N
Sbjct: 365 NEEPLQSSIVTGLLQSSDDQQLKNALSNLEAEEN-QTDDASPCQSSKNSIAVEN 417
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 31.9 bits (69), Expect = 0.55
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 462 FIFTIYNGYIYISFGTPITHNSQLWNHFHICRYYITTSM 346
F F ++ GYI +S +P+ HN +W +Y T +
Sbjct: 275 FTFFLFFGYIGVSLLSPVMHNLWIWRGTGNANFYFATGL 313
>07_01_0463 + 3502708-3503535
Length = 275
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = -1
Query: 353 QVCDKEDVQSSTIEGTNES-KNDNDEKPKENQKEEADNIQTNDCDPCNENRIFDAFKNLQ 177
++ DKE+V+ + +G + K+ + +K KEN+K + + + +D D + + + + +
Sbjct: 55 KIVDKEEVKLDSDDGAKSAVKSKDSKKDKENKKSDKKDDEHDDEDEEGKKKEKEMKEKKK 114
Query: 176 DKFD 165
DK D
Sbjct: 115 DKSD 118
>12_01_0629 - 5183504-5184970
Length = 488
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 3 HFNKNFTWFPICDKLWHSL-LLNVYHYYNPTNTIYINISKTKQVHKLL 143
H ++ W P D LW +L + V H ++P + ++ ++VH ++
Sbjct: 109 HAERSMVWLPSYDPLWKTLRSIAVTHVFSPRSLGVARSARERKVHDMV 156
>01_06_1488 +
37716986-37717076,37717424-37717558,37717755-37717831,
37717934-37718181,37718503-37718559,37718665-37718800,
37718944-37719001,37719110-37719195,37719270-37719326,
37719537-37719557,37720553-37720954,37721500-37721647,
37721940-37722036,37724065-37724202,37724496-37724598,
37724792-37724828,37724905-37725014,37725141-37725164
Length = 674
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -3
Query: 456 FTIYNGYIYISFGTPITHNSQLWNHFHICRYYITTSM 346
F ++ GYI +S +P+ HN +W +Y T +
Sbjct: 273 FFLFFGYIGVSLLSPVMHNLWIWRGTGNANFYFATGL 309
>08_02_0095 -
12285976-12286037,12286111-12287229,12287494-12288604,
12288695-12288757,12288851-12288913,12289268-12289318,
12289538-12289617,12290078-12290164,12290349-12290435,
12290889-12290975,12292106-12292308,12292756-12292922
Length = 1059
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -1
Query: 362 TLQQVCDKEDVQSSTIEGTNESKNDNDEKPKENQKEEADNIQTNDCD 222
T++++ ++ Q T+ +NE+ N +E +E+ DN ND D
Sbjct: 317 TVEEIQIQQTEQHETMPESNETSNSEPNSREELNEEDIDNFLRNDED 363
>04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786
Length = 290
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 332 VQSSTIEGTNESKNDNDEKPKENQKEEA 249
V+ ST GT E+ + + EKP E+ KE+A
Sbjct: 261 VKVSTGSGTQETSSPSTEKPVEDSKEDA 288
>01_06_1485 +
37703696-37703815,37703970-37704044,37704598-37704699,
37704792-37704845,37705030-37705122,37705215-37705307,
37707150-37707254,37707356-37707454,37707558-37707899
Length = 360
Score = 29.1 bits (62), Expect = 3.9
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = -1
Query: 311 GTNESKNDNDEKPKENQKEEAD 246
G++E + + +E+P+EN++EE D
Sbjct: 317 GSDEEEKEEEERPEENEEEEED 338
>07_01_0879 -
7290890-7291694,7291810-7291943,7292089-7292227,
7292338-7292585
Length = 441
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 350 VCDKEDVQSSTIEGTNESKNDNDEKPKENQKEEADN 243
VC ED+Q T ++E N+ DE P + +E D+
Sbjct: 204 VCSLEDLQYCTDGVSSEEDNNVDEPPPKKNHQEPDD 239
>05_03_0226 -
10645036-10646001,10646313-10646828,10646905-10647210,
10647382-10647984
Length = 796
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -1
Query: 326 SSTIEGTNESKNDNDEKPKENQKEEADNIQTNDCDPCNENRIF 198
+S+ +GTN S++D +E+ +E+ + + T D C E + +
Sbjct: 173 ASSSQGTNVSEDDGNEEDEEDFGPDGQPMNTYDKANCTEEKTY 215
>06_02_0032 +
10775031-10775520,10775661-10776246,10776333-10776973,
10777270-10777973
Length = 806
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 344 DKEDVQSSTIEGTNESKNDNDEKPKENQKEEADNIQTND 228
D +S+ IE E+KN+ + E +K+E ++N+
Sbjct: 620 DDRTTKSADIENAGEAKNNTSNETNEKEKQERAATESNE 658
>07_03_0478 +
18556773-18556883,18557219-18557318,18557807-18559513,
18559709-18560094,18560175-18560246,18560366-18560455
Length = 821
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/70 (22%), Positives = 33/70 (47%)
Frame = -1
Query: 377 TFVVITLQQVCDKEDVQSSTIEGTNESKNDNDEKPKENQKEEADNIQTNDCDPCNENRIF 198
+F+++ + E+ + +T E +NE D+ K+ E D + D DP ++
Sbjct: 64 SFILLHPDYLGPMEEEEYNT-ESSNEEDMQEDDGEKQGNVAEGDIFKPVDIDPAFVPKVG 122
Query: 197 DAFKNLQDKF 168
F++ +D F
Sbjct: 123 MVFESEEDAF 132
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/48 (22%), Positives = 27/48 (56%)
Frame = -1
Query: 350 VCDKEDVQSSTIEGTNESKNDNDEKPKENQKEEADNIQTNDCDPCNEN 207
V D+E+V+ + + + D+D+ E ++++ D + +D + +EN
Sbjct: 228 VADEEEVEDTKEDEYTDEDGDSDDDEDEGEEDDDDEGEEDDDEDRSEN 275
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,637,664
Number of Sequences: 37544
Number of extensions: 265378
Number of successful extensions: 842
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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