Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b20
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit Dim1|S...   213   2e-56
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   3.1  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.1  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     26   4.1  

>SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit
           Dim1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score =  213 bits (519), Expect = 2e-56
 Identities = 95/125 (76%), Positives = 109/125 (87%)
 Frame = -2

Query: 526 VINSNLHI*VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYD 347
           +++    + VIRFG D D  C+K DEVLY IAEKV N AVIYLVDI EVPDFNKMYELYD
Sbjct: 18  ILSEQERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYLVDIDEVPDFNKMYELYD 77

Query: 346 PCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVSPKDYS 167
             T+MFF+RNKH+MIDLGTGNNNKINWPLEDKQEMIDIIET++RGARKG+GLV+SPKDYS
Sbjct: 78  RTTIMFFYRNKHMMIDLGTGNNNKINWPLEDKQEMIDIIETIFRGARKGKGLVISPKDYS 137

Query: 166 TKYRY 152
           T++RY
Sbjct: 138 TRHRY 142


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = -2

Query: 481 DWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHI-M 305
           DW+   +K ++  Y I   +      +  DI   P+  + Y   +   V  F     I +
Sbjct: 366 DWNEN-VKKNDTYYDILHAILEDLSKHQDDIAPYPNPYQNYTTSNTSVVNAFEPYDTIDL 424

Query: 304 IDLGTGNNNKINWPLEDKQEMIDII 230
           +D G    N   WPL   Q  +D++
Sbjct: 425 VDGGEDRENIPLWPLLHPQRFVDVV 449


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = -2

Query: 481 DWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHI-M 305
           DW+   +K ++  Y I   +      +  DI   P+  + Y   +   V  F     I +
Sbjct: 366 DWNEN-VKKNDTYYDILHAILEDLSKHQDDIAPYPNPYQNYTTSNTSVVNAFEPYDTIDL 424

Query: 304 IDLGTGNNNKINWPLEDKQEMIDII 230
           +D G    N   WPL   Q  +D++
Sbjct: 425 VDGGEDRENIPLWPLLHPQRFVDVV 449


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 342 HGSYNSYILLKSGTSVMSTK 401
           HG+Y+SY  ++ GTS++  +
Sbjct: 6   HGNYHSYYSMRGGTSIIDPR 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,701
Number of Sequences: 5004
Number of extensions: 49892
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)