Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12b20
(650 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC019272-1|AAH19272.1| 142|Homo sapiens thioredoxin-like 4A pro... 253 5e-67
BC001046-1|AAH01046.1| 142|Homo sapiens thioredoxin-like 4A pro... 253 5e-67
AF146373-1|AAF17332.1| 142|Homo sapiens thioredoxin-like U5 snR... 253 5e-67
AF023611-1|AAB81950.1| 142|Homo sapiens Dim1p homolog protein. 253 5e-67
AF023612-1|AAB81951.1| 91|Homo sapiens Dim1p homolog protein. 134 2e-31
CR457240-1|CAG33521.1| 149|Homo sapiens FLJ20511 protein. 94 3e-19
BC009646-1|AAH09646.1| 149|Homo sapiens thioredoxin-like 4B pro... 94 3e-19
AY566808-1|AAS68520.1| 149|Homo sapiens Dim1-like protein protein. 94 3e-19
AK000518-1|BAA91224.1| 149|Homo sapiens protein ( Homo sapiens ... 94 3e-19
AK222889-1|BAD96609.1| 149|Homo sapiens thioredoxin-like 4B var... 92 1e-18
>BC019272-1|AAH19272.1| 142|Homo sapiens thioredoxin-like 4A
protein.
Length = 142
Score = 253 bits (619), Expect = 5e-67
Identities = 113/125 (90%), Positives = 119/125 (95%)
Frame = -2
Query: 526 VINSNLHI*VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYD 347
+++ + VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYD
Sbjct: 18 ILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYD 77
Query: 346 PCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVSPKDYS 167
PCTVMFFFRNKHIMIDLGTGNNNKINW +EDKQEM+DIIETVYRGARKGRGLVVSPKDYS
Sbjct: 78 PCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYS 137
Query: 166 TKYRY 152
TKYRY
Sbjct: 138 TKYRY 142
>BC001046-1|AAH01046.1| 142|Homo sapiens thioredoxin-like 4A
protein.
Length = 142
Score = 253 bits (619), Expect = 5e-67
Identities = 113/125 (90%), Positives = 119/125 (95%)
Frame = -2
Query: 526 VINSNLHI*VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYD 347
+++ + VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYD
Sbjct: 18 ILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYD 77
Query: 346 PCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVSPKDYS 167
PCTVMFFFRNKHIMIDLGTGNNNKINW +EDKQEM+DIIETVYRGARKGRGLVVSPKDYS
Sbjct: 78 PCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYS 137
Query: 166 TKYRY 152
TKYRY
Sbjct: 138 TKYRY 142
>AF146373-1|AAF17332.1| 142|Homo sapiens thioredoxin-like U5 snRNP
protein U5-15kD protein.
Length = 142
Score = 253 bits (619), Expect = 5e-67
Identities = 113/125 (90%), Positives = 119/125 (95%)
Frame = -2
Query: 526 VINSNLHI*VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYD 347
+++ + VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYD
Sbjct: 18 ILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYD 77
Query: 346 PCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVSPKDYS 167
PCTVMFFFRNKHIMIDLGTGNNNKINW +EDKQEM+DIIETVYRGARKGRGLVVSPKDYS
Sbjct: 78 PCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYS 137
Query: 166 TKYRY 152
TKYRY
Sbjct: 138 TKYRY 142
>AF023611-1|AAB81950.1| 142|Homo sapiens Dim1p homolog protein.
Length = 142
Score = 253 bits (619), Expect = 5e-67
Identities = 113/125 (90%), Positives = 119/125 (95%)
Frame = -2
Query: 526 VINSNLHI*VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYD 347
+++ + VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYD
Sbjct: 18 ILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYD 77
Query: 346 PCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVSPKDYS 167
PCTVMFFFRNKHIMIDLGTGNNNKINW +EDKQEM+DIIETVYRGARKGRGLVVSPKDYS
Sbjct: 78 PCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYS 137
Query: 166 TKYRY 152
TKYRY
Sbjct: 138 TKYRY 142
>AF023612-1|AAB81951.1| 91|Homo sapiens Dim1p homolog protein.
Length = 91
Score = 134 bits (325), Expect = 2e-31
Identities = 59/68 (86%), Positives = 63/68 (92%)
Frame = -2
Query: 526 VINSNLHI*VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYD 347
+++ + VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYD
Sbjct: 18 ILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYD 77
Query: 346 PCTVMFFF 323
PCTVMFFF
Sbjct: 78 PCTVMFFF 85
>CR457240-1|CAG33521.1| 149|Homo sapiens FLJ20511 protein.
Length = 149
Score = 94.3 bits (224), Expect = 3e-19
Identities = 42/110 (38%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Frame = -2
Query: 499 VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYEL-YDPCTVMFFF 323
V+RFG D DP C+++D++L + + A IYLVD+ + + + +++ Y P TV FFF
Sbjct: 27 VLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTV-FFF 85
Query: 322 RNKHIMIDLGTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVSPKD 173
+H+ +D G+ ++ K + KQ+ ID+IE +YRGA +G+ +V SP D
Sbjct: 86 NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPID 135
>BC009646-1|AAH09646.1| 149|Homo sapiens thioredoxin-like 4B
protein.
Length = 149
Score = 94.3 bits (224), Expect = 3e-19
Identities = 42/110 (38%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Frame = -2
Query: 499 VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYEL-YDPCTVMFFF 323
V+RFG D DP C+++D++L + + A IYLVD+ + + + +++ Y P TV FFF
Sbjct: 27 VLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTV-FFF 85
Query: 322 RNKHIMIDLGTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVSPKD 173
+H+ +D G+ ++ K + KQ+ ID+IE +YRGA +G+ +V SP D
Sbjct: 86 NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPID 135
>AY566808-1|AAS68520.1| 149|Homo sapiens Dim1-like protein protein.
Length = 149
Score = 94.3 bits (224), Expect = 3e-19
Identities = 42/110 (38%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Frame = -2
Query: 499 VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYEL-YDPCTVMFFF 323
V+RFG D DP C+++D++L + + A IYLVD+ + + + +++ Y P TV FFF
Sbjct: 27 VLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTV-FFF 85
Query: 322 RNKHIMIDLGTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVSPKD 173
+H+ +D G+ ++ K + KQ+ ID+IE +YRGA +G+ +V SP D
Sbjct: 86 NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPID 135
>AK000518-1|BAA91224.1| 149|Homo sapiens protein ( Homo sapiens
cDNA FLJ20511 fis, clone KAT09708. ).
Length = 149
Score = 94.3 bits (224), Expect = 3e-19
Identities = 42/110 (38%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Frame = -2
Query: 499 VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYEL-YDPCTVMFFF 323
V+RFG D DP C+++D++L + + A IYLVD+ + + + +++ Y P TV FFF
Sbjct: 27 VLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTV-FFF 85
Query: 322 RNKHIMIDLGTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVSPKD 173
+H+ +D G+ ++ K + KQ+ ID+IE +YRGA +G+ +V SP D
Sbjct: 86 NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPID 135
>AK222889-1|BAD96609.1| 149|Homo sapiens thioredoxin-like 4B
variant protein.
Length = 149
Score = 92.3 bits (219), Expect = 1e-18
Identities = 41/110 (37%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Frame = -2
Query: 499 VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYEL-YDPCTVMFFF 323
V+RFG D DP C+++D++L + + A I+LVD+ + + + +++ Y P TV FFF
Sbjct: 27 VLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIHLVDVDQTAVYTQYFDISYIPSTV-FFF 85
Query: 322 RNKHIMIDLGTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVSPKD 173
+H+ +D G+ ++ K + KQ+ ID+IE +YRGA +G+ +V SP D
Sbjct: 86 NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPID 135
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,074,963
Number of Sequences: 237096
Number of extensions: 1610270
Number of successful extensions: 2777
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2766
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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