Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b18
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    29   0.25 
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    26   1.8  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    26   1.8  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    24   5.4  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    24   7.1  
SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|c...    24   7.1  

>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 28.7 bits (61), Expect = 0.25
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 127 FNYLIFCATCSIVAICNNTASYTLNFITSI 216
           F YL++ A CS+ +I N  A +   F   +
Sbjct: 426 FAYLVYLAMCSLASISNGIADFVFQFYEDV 455


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 240 FDNVHFAKNGSYKIQG 193
           FD VHF K  SY +QG
Sbjct: 85  FDEVHFGKFASYYLQG 100


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 103 VFFNIYFSFNYLIFCATCSIVAICNNTAS 189
           VFFN Y  F Y        IV IC N A+
Sbjct: 605 VFFNNYSRFEYEKESKRSDIVCICTNDAN 633


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 234 NVHFAKNGSYKIQGVTCGIITY 169
           N  FA  G  +  G+ C ++TY
Sbjct: 58  NCAFAAEGYARSNGIACAVVTY 79


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 92  INKAVLNCDYTIILLIFKHVATT 24
           + K V++C  TI  L+F H  T+
Sbjct: 89  VKKDVISCSCTIYPLVFLHCCTS 111


>SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 216

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +1

Query: 97  LSVFFNIYFSFNYLIFCATCSIVAICNNTASYTLNFITSIFCKMH 231
           L+ F+  Y  FN L F        I +  +   +  I++++  MH
Sbjct: 31  LNGFYRKYHGFNSLRFVRVLQEAGIDDKKSETLMRLISNVYSDMH 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,128,657
Number of Sequences: 5004
Number of extensions: 16758
Number of successful extensions: 28
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)