Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b18
         (336 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0539 - 10408398-10409552                                         27   3.8  
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659...    26   8.7  

>09_02_0539 - 10408398-10409552
          Length = 384

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 313 VNCVTLFLMMNKMVGWYLCY 254
           +NCV L L +N  V WY CY
Sbjct: 176 INCVVLVLSLNDTVIWY-CY 194


>02_02_0078 +
           6587491-6588021,6588160-6589151,6592430-6592607,
           6592635-6592794,6592992-6593158,6593246-6593869
          Length = 883

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 183 RKLHLEFYNFHFLQNAHCQNVI--IL*HKYQPTILFIIKNNVTQLTRHEIL 329
           +KL +EF +  F+  +HC NV    L    +P++  +  N      R  +L
Sbjct: 829 KKLGVEFISVSFIHVSHCSNVAAHTLARCSEPSVCNVYHNETPDCIREMLL 879


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,401,428
Number of Sequences: 37544
Number of extensions: 84682
Number of successful extensions: 162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)