Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b16
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46669-1|AAZ86798.1|  413|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z78200-1|CAB01579.1|  377|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AF022979-9|AAB69904.1|  466|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z81512-5|CAI79169.1|  417|Caenorhabditis elegans Hypothetical pr...    28   9.0  

>U46669-1|AAZ86798.1|  413|Caenorhabditis elegans Hypothetical
           protein C41G11.1b protein.
          Length = 413

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
 Frame = -2

Query: 550 VFLFTLLKESRMTLSNP-LVFSLM--SQFI**CLFNNI-CKYVLASFRPRLYLLNSIEF 386
           +F+ T++ +   T++   L F LM  +QF   C  +N+ CK+V    R R +L N +EF
Sbjct: 14  LFISTVISQENGTITEEILTFLLMGDTQFHFPCEQDNVQCKHVSKKNRARFFLDNELEF 72


>Z78200-1|CAB01579.1|  377|Caenorhabditis elegans Hypothetical
           protein T04H1.1 protein.
          Length = 377

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 316 YSLSENFTALQF*DIF--KVQFCDC*KMYFIPAIVIL 212
           Y     + ALQ+ D+    +QFC    ++F+PA+V L
Sbjct: 286 YYQCARYVALQYADVVIAAIQFCKAIALFFVPALVAL 322


>AF022979-9|AAB69904.1|  466|Caenorhabditis elegans Hypothetical
           protein T02B11.6 protein.
          Length = 466

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 274 IFKVQFCDC*KMYFIPAIV 218
           I  +QFC C  ++F+PAIV
Sbjct: 387 IAAIQFCKCLALFFVPAIV 405


>Z81512-5|CAI79169.1|  417|Caenorhabditis elegans Hypothetical
           protein F25C8.5 protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 498 NGLLNVILDSFKSVNKKTNMFNFCFKL 578
           N L NVI++S KSV       N CF+L
Sbjct: 288 NDLTNVIIESLKSVQNLIIQDNHCFEL 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,294,491
Number of Sequences: 27780
Number of extensions: 334593
Number of successful extensions: 643
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)