Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12b15
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0463 + 19379222-19379225,19379565-19380322 30 1.5
03_05_0330 + 23218018-23218398 30 1.5
10_08_0941 - 21717703-21718091,21718454-21718564,21718707-217187... 29 2.6
10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754... 29 2.6
06_03_1333 - 29410014-29410052,29410071-29410322,29410601-294106... 29 2.6
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428... 29 3.5
01_06_1055 + 34135174-34135600,34137330-34138246 29 3.5
09_04_0285 + 16390786-16391291,16391370-16391957,16392034-163921... 29 4.6
02_01_0593 + 4408229-4408294,4408764-4409096,4409756-4409794,440... 29 4.6
>12_02_0463 + 19379222-19379225,19379565-19380322
Length = 253
Score = 30.3 bits (65), Expect = 1.5
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Frame = -2
Query: 588 VASLAAEARNARDVVSRTRTQRKAVR---AQKKQVLAQLNNLRETEVRELEST---VRLS 427
VAS+ A+ RD+V + + KAVR A+ + LA L + V E E+T + L
Sbjct: 114 VASMEAQVAGERDIVDAKKLRLKAVRAAVAEYRDGLAALMTPAD-GVEEQEATAAVMSLL 172
Query: 426 DRKLFKSWEALKDSTDPTVFEPLLEEIKNRQTALDCLVRLIESRRSKLARIPIP 265
+R EA + D F+ L+E++ + RL+E +++L IP+P
Sbjct: 173 ERLDAAESEAAALAADVDGFDGLVEQLAAARE------RLVE-EKARLDAIPVP 219
>03_05_0330 + 23218018-23218398
Length = 126
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Frame = -2
Query: 285 LARIPIPLH-SLPPLEPRDNDDSCTTYGRKRHDSGTXXXXXXXXXXXXXXXXXSVPLSSE 109
L+R P P H +LPP+ +D D GR+ SGT
Sbjct: 16 LSRSPHPGHRALPPVPGKDEDGGSCNRGRRPEQSGTMVAATTEDGAAAGVIAARGHSGGT 75
Query: 108 TSRHGPMPQVTLLIQGAES--SAGRTAAELSTAGSVR 4
+ G M +V L+ G + S T E G +R
Sbjct: 76 AAGDGLMNKVAQLMDGVDGARSGKETVRERRERGKIR 112
>10_08_0941 -
21717703-21718091,21718454-21718564,21718707-21718791,
21718885-21719106,21719804-21720292,21722206-21722322
Length = 470
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 584 LHWPRKHGTHGTSYRARGHKGKLCAHRRSKFLLNSITC 471
+ WP KH + G S+ G +C R K +N ++C
Sbjct: 128 VQWP-KHASRGVSFTKDGKFAAICTRRDCKDYVNLLSC 164
>10_08_0259 +
16274430-16274747,16275180-16275242,16275329-16275424,
16275526-16275618,16276415-16276605,16276684-16276921,
16277805-16277900,16278324-16278404,16278532-16278939,
16279048-16279331,16279460-16279547,16279630-16279830,
16280032-16280118,16280119-16280238,16280536-16280708,
16281914-16282055,16282292-16282414,16282601-16282656,
16282735-16283038,16283154-16283283,16283491-16283549,
16283829-16284061,16285480-16285527,16285765-16285843,
16285925-16286169,16286338-16286722
Length = 1446
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/98 (24%), Positives = 42/98 (42%)
Frame = -2
Query: 588 VASLAAEARNARDVVSRTRTQRKAVRAQKKQVLAQLNNLRETEVRELESTVRLSDRKLFK 409
V +L E +A ++ + + +K + +L + ELES V ++ K
Sbjct: 114 VETLITEFLDAESKAAQAQESLEKESLEKIESEVRLELSESLQGNELESAVSTEMKQYKK 173
Query: 408 SWEALKDSTDPTVFEPLLEEIKNRQTALDCLVRLIESR 295
WE+ D + T LLE++ L L + IES+
Sbjct: 174 EWESELDDLE-THIAVLLEQLDAAGVELPSLYKSIESQ 210
>06_03_1333 -
29410014-29410052,29410071-29410322,29410601-29410633,
29411035-29411045,29411420-29415325,29415437-29415920
Length = 1574
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 483 LNNLRETEVRELESTVRLSDRKLFKSWEALKDSTDPTVFEPLLEEIKNRQTALD 322
L N++ + EL + RL KL W+ + + DP+ E +LE +K L+
Sbjct: 821 LENVKAAKEAELLNKSRL--HKLILDWDIKRSTNDPSQEEHILENLKPHSNLLE 872
>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
22343193-22343317,22343815-22344276,22344357-22344700,
22345061-22345406,22345492-22345941,22346760-22347051,
22347171-22347515,22347611-22347834,22348072-22348563,
22348664-22349056,22349601-22349741,22349845-22350207,
22350494-22352683,22353298-22353360,22353434-22353535,
22353672-22354027,22354326-22354413,22354517-22354750,
22355508-22355975
Length = 2632
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 228 HCHEVRAVVGSATVWESWRASNDE--TQSNAQDSRA 329
HC +VR ++ S+ VW +++ + SNAQ S A
Sbjct: 2545 HCAKVREILNSSDVWSAYKDQKHDLFLPSNAQSSAA 2580
>01_06_1055 + 34135174-34135600,34137330-34138246
Length = 447
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/26 (53%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = -2
Query: 444 STVRLSDRKLFKSWE-ALKDSTDPTV 370
S+VRLSD K+F+SWE ++K +T+ V
Sbjct: 157 SSVRLSDVKIFRSWERSMKLTTEAFV 182
>09_04_0285 +
16390786-16391291,16391370-16391957,16392034-16392160,
16392291-16392477,16392585-16392741,16392847-16393201
Length = 639
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = -2
Query: 579 LAAEARNARDVVSRTRTQRKAVRAQKKQVLAQLNNLRETEVRELESTVRLSDRKLFKSWE 400
LA ++N D + KA+ Q K++ LRE + E+ T+ + +S+E
Sbjct: 226 LAEASKNVGDQIDDVLAHSKAIFEQSKEIADSQAKLREGQT-EMRETIDAGMTHIQESYE 284
Query: 399 ALKDSTD 379
+L + D
Sbjct: 285 SLGNGMD 291
>02_01_0593 +
4408229-4408294,4408764-4409096,4409756-4409794,
4409870-4409937,4410024-4410068,4410478-4410655,
4410740-4410871,4410941-4411009,4411258-4411305,
4411498-4411545,4411654-4411763,4412044-4412125,
4412232-4412345
Length = 443
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -2
Query: 483 LNNLRETEVRELESTVRLSDRKLFKSWEALKDS--TDPTVFEPLLEEIKNRQTALDCLVR 310
L LR + L S V L R ++AL++ T+P + +P+L+E+ + L+R
Sbjct: 302 LEFLRHNQQHTLSSFV-LEQRTTLYGFQALREMVHTNPQILQPMLQELSKKNPQ---LLR 357
Query: 309 LIESRRSKLARI 274
LI+ + ++
Sbjct: 358 LIQENHDEFLQL 369
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,436,375
Number of Sequences: 37544
Number of extensions: 325978
Number of successful extensions: 1155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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