Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12b15
(691 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014298-966|AAF46211.1| 933|Drosophila melanogaster CG4557-PA ... 32 0.64
AL031582-1|CAA20895.1| 1082|Drosophila melanogaster EG:118B3.2 p... 30 3.4
AF181633-1|AAD55419.1| 949|Drosophila melanogaster EG:118B3.2 p... 30 3.4
AE014298-63|AAF45522.2| 950|Drosophila melanogaster CG13366-PA,... 30 3.4
AE014298-62|ABI30962.1| 1094|Drosophila melanogaster CG13366-PB,... 30 3.4
BT021442-1|AAX33590.1| 334|Drosophila melanogaster GH05177p pro... 29 4.5
AE014298-1385|AAF46535.2| 334|Drosophila melanogaster CG1791-PA... 29 4.5
AY121711-1|AAM52038.1| 518|Drosophila melanogaster RH63657p pro... 29 6.0
AE014297-2032|AAF55188.1| 518|Drosophila melanogaster CG14868-P... 29 6.0
AY119446-1|AAM50100.1| 1057|Drosophila melanogaster AT09405p pro... 29 7.9
AJ849544-1|CAH61079.2| 1740|Drosophila melanogaster CAST protein. 29 7.9
AE013599-872|AAF58930.3| 1740|Drosophila melanogaster CG34146-PA... 29 7.9
>AE014298-966|AAF46211.1| 933|Drosophila melanogaster CG4557-PA
protein.
Length = 933
Score = 32.3 bits (70), Expect = 0.64
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 12/89 (13%)
Frame = -2
Query: 552 DVVSRTRTQRKAVRAQKKQVLAQLNNLRET------EVRELESTVRLSDRKLFKSWEALK 391
D+ RTR ++ ++RA+ ++ + Q+++LRE + E +R +R+L + EA +
Sbjct: 523 DLQKRTRLEQDSLRAEHQEYVQQVSDLREKLRLAEHSLARREQQMREENRQLMRRLEAAE 582
Query: 390 DSTDPTVFE------PLLEEIKNRQTALD 322
+ + E PL+ +I++ Q LD
Sbjct: 583 LRAESSTQELGATTTPLIRQIESLQRTLD 611
>AL031582-1|CAA20895.1| 1082|Drosophila melanogaster EG:118B3.2
protein.
Length = 1082
Score = 29.9 bits (64), Expect = 3.4
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Frame = -2
Query: 552 DVVSRTRTQRKAVRAQKKQV---LAQLNNLRETEVRELE---STVRLSDRKLFKSWEALK 391
D++ ++ +R+AV +++++ LA++ RE EL+ + L D +L + +
Sbjct: 487 DLIKTSQEEREAVLLKQEELGAELAEMKQAREAGQLELQRQRERIALLDSQLDAANAERR 546
Query: 390 DSTDPTVFEPLLEEIKNRQTALDCLVRLIESRRSKLARIPIPL 262
F +EEI R + L L+E+ RSK+ + L
Sbjct: 547 QGE--AQFSQAMEEISQRAIEISRLSTLLENARSKIEELEADL 587
>AF181633-1|AAD55419.1| 949|Drosophila melanogaster EG:118B3.2
protein.
Length = 949
Score = 29.9 bits (64), Expect = 3.4
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Frame = -2
Query: 552 DVVSRTRTQRKAVRAQKKQV---LAQLNNLRETEVRELE---STVRLSDRKLFKSWEALK 391
D++ ++ +R+AV +++++ LA++ RE EL+ + L D +L + +
Sbjct: 342 DLIKTSQEEREAVLLKQEELGAELAEMKQAREAGQLELQRQRERIALLDSQLDAANAERR 401
Query: 390 DSTDPTVFEPLLEEIKNRQTALDCLVRLIESRRSKLARIPIPL 262
F +EEI R + L L+E+ RSK+ + L
Sbjct: 402 QGE--AQFSQAMEEISQRAIEISRLSTLLENARSKIEELEADL 442
>AE014298-63|AAF45522.2| 950|Drosophila melanogaster CG13366-PA,
isoform A protein.
Length = 950
Score = 29.9 bits (64), Expect = 3.4
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Frame = -2
Query: 552 DVVSRTRTQRKAVRAQKKQV---LAQLNNLRETEVRELE---STVRLSDRKLFKSWEALK 391
D++ ++ +R+AV +++++ LA++ RE EL+ + L D +L + +
Sbjct: 343 DLIKTSQEEREAVLLKQEELGAELAEMKQAREAGQLELQRQRERIALLDSQLDAANAERR 402
Query: 390 DSTDPTVFEPLLEEIKNRQTALDCLVRLIESRRSKLARIPIPL 262
F +EEI R + L L+E+ RSK+ + L
Sbjct: 403 QGE--AQFSQAMEEISQRAIEISRLSTLLENARSKIEELEADL 443
>AE014298-62|ABI30962.1| 1094|Drosophila melanogaster CG13366-PB,
isoform B protein.
Length = 1094
Score = 29.9 bits (64), Expect = 3.4
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Frame = -2
Query: 552 DVVSRTRTQRKAVRAQKKQV---LAQLNNLRETEVRELE---STVRLSDRKLFKSWEALK 391
D++ ++ +R+AV +++++ LA++ RE EL+ + L D +L + +
Sbjct: 487 DLIKTSQEEREAVLLKQEELGAELAEMKQAREAGQLELQRQRERIALLDSQLDAANAERR 546
Query: 390 DSTDPTVFEPLLEEIKNRQTALDCLVRLIESRRSKLARIPIPL 262
F +EEI R + L L+E+ RSK+ + L
Sbjct: 547 QGE--AQFSQAMEEISQRAIEISRLSTLLENARSKIEELEADL 587
>BT021442-1|AAX33590.1| 334|Drosophila melanogaster GH05177p
protein.
Length = 334
Score = 29.5 bits (63), Expect = 4.5
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = -2
Query: 432 LSDRKLFKSWEALKDSTDPTVFEPLLEEIKNRQTALDCLVRLIESRRSKLARIPIPLHSL 253
L+ R F + E T+ + L+EE KN+ T + RL+ + + P+ L +
Sbjct: 57 LAARVQFMTDELQNLKTELNELQGLIEEYKNQGTGIPIATRLLRPLPASVQTFPLALATP 116
Query: 252 PPLEPRD 232
P PR+
Sbjct: 117 PDDTPRN 123
>AE014298-1385|AAF46535.2| 334|Drosophila melanogaster CG1791-PA
protein.
Length = 334
Score = 29.5 bits (63), Expect = 4.5
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = -2
Query: 432 LSDRKLFKSWEALKDSTDPTVFEPLLEEIKNRQTALDCLVRLIESRRSKLARIPIPLHSL 253
L+ R F + E T+ + L+EE KN+ T + RL+ + + P+ L +
Sbjct: 57 LAARVQFMTDELQNLKTELNELQGLIEEYKNQGTGIPIATRLLRPLPASVQTFPLALATP 116
Query: 252 PPLEPRD 232
P PR+
Sbjct: 117 PDDTPRN 123
>AY121711-1|AAM52038.1| 518|Drosophila melanogaster RH63657p
protein.
Length = 518
Score = 29.1 bits (62), Expect = 6.0
Identities = 22/101 (21%), Positives = 44/101 (43%)
Frame = -2
Query: 585 ASLAAEARNARDVVSRTRTQRKAVRAQKKQVLAQLNNLRETEVRELESTVRLSDRKLFKS 406
+SLAA R+ + T+ +A+R + ++ + LRETE ++ ++
Sbjct: 87 SSLAALLHETREQNLKLSTEVEALRQRLNELHGDMELLRETEASNKSRVQAMASENAARN 146
Query: 405 WEALKDSTDPTVFEPLLEEIKNRQTALDCLVRLIESRRSKL 283
E L+ + F LE +K R L ++ + + +L
Sbjct: 147 KEELQWRRERANFICHLEGLKKRNAQLAFDLKAVIDEKEEL 187
>AE014297-2032|AAF55188.1| 518|Drosophila melanogaster CG14868-PA
protein.
Length = 518
Score = 29.1 bits (62), Expect = 6.0
Identities = 22/101 (21%), Positives = 44/101 (43%)
Frame = -2
Query: 585 ASLAAEARNARDVVSRTRTQRKAVRAQKKQVLAQLNNLRETEVRELESTVRLSDRKLFKS 406
+SLAA R+ + T+ +A+R + ++ + LRETE ++ ++
Sbjct: 87 SSLAALLHETREQNLKLSTEVEALRQRLNELHGDMELLRETEASNKSRVQAMASENAARN 146
Query: 405 WEALKDSTDPTVFEPLLEEIKNRQTALDCLVRLIESRRSKL 283
E L+ + F LE +K R L ++ + + +L
Sbjct: 147 KEELQWRRERANFICHLEGLKKRNAQLAFDLKAVIDEKEEL 187
>AY119446-1|AAM50100.1| 1057|Drosophila melanogaster AT09405p protein.
Length = 1057
Score = 28.7 bits (61), Expect = 7.9
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 537 TRTQRKAVRAQKKQVLAQLNNLRETEVRELESTVRLSDRK 418
T +RK + Q+KQ+ A+ ++ E E + E V+L RK
Sbjct: 905 TEGERKIIDEQRKQIDAKRKDIEEKEKKMAEFDVQLRKRK 944
>AJ849544-1|CAH61079.2| 1740|Drosophila melanogaster CAST protein.
Length = 1740
Score = 28.7 bits (61), Expect = 7.9
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 537 TRTQRKAVRAQKKQVLAQLNNLRETEVRELESTVRLSDRK 418
T +RK + Q+KQ+ A+ ++ E E + E V+L RK
Sbjct: 1588 TEGERKIIDEQRKQIDAKRKDIEEKEKKMAEFDVQLRKRK 1627
>AE013599-872|AAF58930.3| 1740|Drosophila melanogaster CG34146-PA
protein.
Length = 1740
Score = 28.7 bits (61), Expect = 7.9
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 537 TRTQRKAVRAQKKQVLAQLNNLRETEVRELESTVRLSDRK 418
T +RK + Q+KQ+ A+ ++ E E + E V+L RK
Sbjct: 1588 TEGERKIIDEQRKQIDAKRKDIEEKEKKMAEFDVQLRKRK 1627
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,251,092
Number of Sequences: 53049
Number of extensions: 520525
Number of successful extensions: 1802
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1798
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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