Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12b14
(835 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M96575-1|AAB59184.1| 1775|Drosophila melanogaster type IV collag... 63 5e-10
M23704-1|AAA28404.1| 1775|Drosophila melanogaster alpha-1 type I... 63 5e-10
J02727-1|AAA28423.1| 1775|Drosophila melanogaster type IV pro-co... 63 5e-10
AE014134-846|AAN10520.1| 1779|Drosophila melanogaster CG4145-PC,... 63 5e-10
AE014134-845|AAN10519.1| 1779|Drosophila melanogaster CG4145-PB,... 63 5e-10
AE014134-844|AAF52204.1| 1779|Drosophila melanogaster CG4145-PA,... 63 5e-10
M28334-1|AAA28422.1| 421|Drosophila melanogaster type VI-relate... 62 9e-10
U65431-1|AAB64082.1| 1761|Drosophila melanogaster collagen type ... 49 9e-06
AE014134-843|AAF52203.1| 1940|Drosophila melanogaster CG16858-PA... 49 9e-06
>M96575-1|AAB59184.1| 1775|Drosophila melanogaster type IV collagen
protein.
Length = 1775
Score = 62.9 bits (146), Expect = 5e-10
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = -1
Query: 811 GTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLXERVSRCAVCIKNTT 659
GTCH + SFW+ +E SQ F P++QT+K+G+ VSRC VC+KN++
Sbjct: 1725 GTCHFYETMTSFWMYNLESSQPFERPQQQTIKAGERQSHVSRCQVCMKNSS 1775
>M23704-1|AAA28404.1| 1775|Drosophila melanogaster alpha-1 type IV
collagen protein.
Length = 1775
Score = 62.9 bits (146), Expect = 5e-10
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = -1
Query: 811 GTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLXERVSRCAVCIKNTT 659
GTCH + SFW+ +E SQ F P++QT+K+G+ VSRC VC+KN++
Sbjct: 1725 GTCHFYETMTSFWMYNLESSQPFERPQQQTIKAGERQSHVSRCQVCMKNSS 1775
>J02727-1|AAA28423.1| 1775|Drosophila melanogaster type IV
pro-collagen protein.
Length = 1775
Score = 62.9 bits (146), Expect = 5e-10
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = -1
Query: 811 GTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLXERVSRCAVCIKNTT 659
GTCH + SFW+ +E SQ F P++QT+K+G+ VSRC VC+KN++
Sbjct: 1725 GTCHFYETMTSFWMYNLESSQPFERPQQQTIKAGERQSHVSRCQVCMKNSS 1775
>AE014134-846|AAN10520.1| 1779|Drosophila melanogaster CG4145-PC,
isoform C protein.
Length = 1779
Score = 62.9 bits (146), Expect = 5e-10
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = -1
Query: 811 GTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLXERVSRCAVCIKNTT 659
GTCH + SFW+ +E SQ F P++QT+K+G+ VSRC VC+KN++
Sbjct: 1729 GTCHFYETMTSFWMYNLESSQPFERPQQQTIKAGERQSHVSRCQVCMKNSS 1779
>AE014134-845|AAN10519.1| 1779|Drosophila melanogaster CG4145-PB,
isoform B protein.
Length = 1779
Score = 62.9 bits (146), Expect = 5e-10
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = -1
Query: 811 GTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLXERVSRCAVCIKNTT 659
GTCH + SFW+ +E SQ F P++QT+K+G+ VSRC VC+KN++
Sbjct: 1729 GTCHFYETMTSFWMYNLESSQPFERPQQQTIKAGERQSHVSRCQVCMKNSS 1779
>AE014134-844|AAF52204.1| 1779|Drosophila melanogaster CG4145-PA,
isoform A protein.
Length = 1779
Score = 62.9 bits (146), Expect = 5e-10
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = -1
Query: 811 GTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLXERVSRCAVCIKNTT 659
GTCH + SFW+ +E SQ F P++QT+K+G+ VSRC VC+KN++
Sbjct: 1729 GTCHFYETMTSFWMYNLESSQPFERPQQQTIKAGERQSHVSRCQVCMKNSS 1779
>M28334-1|AAA28422.1| 421|Drosophila melanogaster type VI-related
collagen protein.
Length = 421
Score = 62.1 bits (144), Expect = 9e-10
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = -1
Query: 811 GTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLXERVSRCAVCIKNTT 659
GTCH + SFW+ +E SQ F P++QT+K+G+ VSRC VC+KN++
Sbjct: 371 GTCHFYETITSFWMYNLESSQPFERPQQQTIKAGERQSHVSRCQVCMKNSS 421
>U65431-1|AAB64082.1| 1761|Drosophila melanogaster collagen type IV
alpha 2 protein.
Length = 1761
Score = 48.8 bits (111), Expect = 9e-06
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = -1
Query: 811 GTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLXERVSRCAVC 674
G C+++ SFWLT +E+ QF P +QTLK+ ++SRC VC
Sbjct: 1688 GRCNYYDALASFWLTVIEEQDQFVQPRQQTLKA-DFTSKISRCTVC 1732
>AE014134-843|AAF52203.1| 1940|Drosophila melanogaster CG16858-PA
protein.
Length = 1940
Score = 48.8 bits (111), Expect = 9e-06
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = -1
Query: 811 GTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLXERVSRCAVC 674
G C+++ SFWLT +E+ QF P +QTLK+ ++SRC VC
Sbjct: 1690 GRCNYYDALASFWLTVIEEQDQFVQPRQQTLKA-DFTSKISRCTVC 1734
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,409,161
Number of Sequences: 53049
Number of extensions: 614031
Number of successful extensions: 846
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3962724636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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