Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12b14
(835 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 83 2e-16
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 83 2e-16
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 83 2e-16
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 83 2e-16
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 83 2e-16
J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV) co... 83 2e-16
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 64 1e-10
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 64 1e-10
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 61 8e-10
J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein. 61 8e-10
U28740-1|AAA68317.3| 434|Caenorhabditis elegans Hypothetical pr... 32 0.44
U28740-2|AAM51506.2| 417|Caenorhabditis elegans Hypothetical pr... 31 0.77
AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical ... 28 9.5
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 83.4 bits (197), Expect = 2e-16
Identities = 34/54 (62%), Positives = 42/54 (77%)
Frame = -1
Query: 811 GTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLXERVSRCAVCIKNTT*SH 650
G+CH+FANK SFWLTT+++ +F VPE QTLKSG L RVSRC VC+K+T H
Sbjct: 1706 GSCHYFANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQVCVKSTDGRH 1759
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 83.4 bits (197), Expect = 2e-16
Identities = 34/54 (62%), Positives = 42/54 (77%)
Frame = -1
Query: 811 GTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLXERVSRCAVCIKNTT*SH 650
G+CH+FANK SFWLTT+++ +F VPE QTLKSG L RVSRC VC+K+T H
Sbjct: 1705 GSCHYFANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQVCVKSTDGRH 1758
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 83.4 bits (197), Expect = 2e-16
Identities = 34/54 (62%), Positives = 42/54 (77%)
Frame = -1
Query: 811 GTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLXERVSRCAVCIKNTT*SH 650
G+CH+FANK SFWLTT+++ +F VPE QTLKSG L RVSRC VC+K+T H
Sbjct: 1705 GSCHYFANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQVCVKSTDGRH 1758
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 83.4 bits (197), Expect = 2e-16
Identities = 34/54 (62%), Positives = 42/54 (77%)
Frame = -1
Query: 811 GTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLXERVSRCAVCIKNTT*SH 650
G+CH+FANK SFWLTT+++ +F VPE QTLKSG L RVSRC VC+K+T H
Sbjct: 1706 GSCHYFANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQVCVKSTDGRH 1759
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 83.4 bits (197), Expect = 2e-16
Identities = 34/54 (62%), Positives = 42/54 (77%)
Frame = -1
Query: 811 GTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLXERVSRCAVCIKNTT*SH 650
G+CH+FANK SFWLTT+++ +F VPE QTLKSG L RVSRC VC+K+T H
Sbjct: 1742 GSCHYFANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQVCVKSTDGRH 1795
>J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV)
collagen protein.
Length = 261
Score = 83.4 bits (197), Expect = 2e-16
Identities = 34/54 (62%), Positives = 42/54 (77%)
Frame = -1
Query: 811 GTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLXERVSRCAVCIKNTT*SH 650
G+CH+FANK SFWLTT+++ +F VPE QTLKSG L RVSRC VC+K+T H
Sbjct: 208 GSCHYFANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQVCVKSTDGRH 261
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 64.1 bits (149), Expect = 1e-10
Identities = 26/49 (53%), Positives = 35/49 (71%)
Frame = -1
Query: 811 GTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLXERVSRCAVCIKN 665
GTC+++A FWL+ V+ +QF P QTLK+G L +RVSRC VC+KN
Sbjct: 1453 GTCNYYATNHGFWLSIVDQDKQFRKPMSQTLKAGGLKDRVSRCQVCLKN 1501
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 64.1 bits (149), Expect = 1e-10
Identities = 26/49 (53%), Positives = 35/49 (71%)
Frame = -1
Query: 811 GTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLXERVSRCAVCIKN 665
GTC+++A FWL+ V+ +QF P QTLK+G L +RVSRC VC+KN
Sbjct: 1710 GTCNYYATNHGFWLSIVDQDKQFRKPMSQTLKAGGLKDRVSRCQVCLKN 1758
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 61.3 bits (142), Expect = 8e-10
Identities = 25/49 (51%), Positives = 34/49 (69%)
Frame = -1
Query: 811 GTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLXERVSRCAVCIKN 665
GTC+++A FW + V+ +QF P QTLK+G L +RVSRC VC+KN
Sbjct: 1709 GTCNYYATNHGFWPSIVDQDKQFRKPMSQTLKAGGLKDRVSRCQVCLKN 1757
>J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein.
Length = 313
Score = 61.3 bits (142), Expect = 8e-10
Identities = 25/49 (51%), Positives = 34/49 (69%)
Frame = -1
Query: 811 GTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLXERVSRCAVCIKN 665
GTC+++A FW + V+ +QF P QTLK+G L +RVSRC VC+KN
Sbjct: 264 GTCNYYATNHGFWPSIVDQDKQFRKPMSQTLKAGGLKDRVSRCQVCLKN 312
>U28740-1|AAA68317.3| 434|Caenorhabditis elegans Hypothetical
protein B0563.6a protein.
Length = 434
Score = 32.3 bits (70), Expect = 0.44
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = +3
Query: 462 LTNHNSETILFSTKSKFVIKN*LPYFNCFP*QYLNKDGIFSLIRKKQQYPIQKNTVAANY 641
+TNH S+ +F S L F CF Y N+D + S +R+ Q IQK +
Sbjct: 300 ITNHASQFYVFCACSTDYRTTFLQKFPCFKTDYANRDRLRSFVRRTQSV-IQKQGSVEHT 358
Query: 642 KNL*DYVVF 668
N +++F
Sbjct: 359 TNSKVWIMF 367
>U28740-2|AAM51506.2| 417|Caenorhabditis elegans Hypothetical
protein B0563.6b protein.
Length = 417
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 462 LTNHNSETILFSTKSKFVIKN*LPYFNCFP*QYLNKDGIFSLIRKKQQYPIQK 620
+TNH S+ +F S L F CF Y N+D + S +R+ Q IQK
Sbjct: 291 ITNHASQFYVFCACSTDYRTTFLQKFPCFKTDYANRDRLRSFVRRTQSV-IQK 342
>AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical
protein Y53C10A.4 protein.
Length = 908
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 575 YFFSYQEETAISYTEKYSSRKL*KFMRLCRILNANRTSRDSF 700
YFF Y E IS + S KL + +RL ++ A+ + DSF
Sbjct: 44 YFFLYHETLIISKQKGACSYKLKEKLRLEKVWIASSNTADSF 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,758,167
Number of Sequences: 27780
Number of extensions: 365452
Number of successful extensions: 659
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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