Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b13
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1071 - 8755157-8755510                                           54   3e-08
06_01_1072 - 8756386-8756706                                           52   1e-07
10_07_0150 - 13422497-13422575,13423360-13423433,13423948-134241...    28   2.8  
12_01_0591 - 4835894-4836328,4836343-4837882,4838911-4839050,484...    26   8.6  
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683...    26   8.6  

>06_01_1071 - 8755157-8755510
          Length = 117

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 30/63 (47%), Positives = 35/63 (55%)
 Frame = -2

Query: 290 VFGKVQGVFFRKFTQKKALELGLKGWVMNTAQGTVIGQLQGPSTAVDDMKLWLQKVGSPK 111
           V G+VQGV FR +T + A  LGL GWV N   GTV   L G    VD+M      VGSP 
Sbjct: 32  VKGRVQGVGFRDWTAETAESLGLAGWVRNRRDGTVEALLSGDPAKVDEMVSRHLPVGSPA 91

Query: 110 SKI 102
           S +
Sbjct: 92  SAV 94


>06_01_1072 - 8756386-8756706
          Length = 106

 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 26/49 (53%), Positives = 30/49 (61%)
 Frame = -2

Query: 290 VFGKVQGVFFRKFTQKKALELGLKGWVMNTAQGTVIGQLQGPSTAVDDM 144
           V G+VQGVFFR +T + A  LGL GWV N   GTV   L G    VD+M
Sbjct: 21  VKGRVQGVFFRDWTVETARALGLAGWVRNRRDGTVEALLSGDPARVDEM 69


>10_07_0150 -
           13422497-13422575,13423360-13423433,13423948-13424160,
           13425143-13425214,13425320-13425745
          Length = 287

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 160 VEGP*S*PITVPCAVFITHPLSPSSNAFFCVNFLKNTPCTFPKTSKSAVT 309
           V+GP    +T P  VFI +P S ++ A     +L+    T P+     VT
Sbjct: 149 VDGPVQAVVTAPLFVFIENPASMAAAAAASSGWLRRAAGTVPRIPCGLVT 198


>12_01_0591 -
           4835894-4836328,4836343-4837882,4838911-4839050,
           4840051-4840605
          Length = 889

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 42  FKCPKSA-AFNISLIPERRFLDLRFWAS 122
           F CPK   AF +  +P  + LDLRF+ +
Sbjct: 800 FSCPKPRLAFLVGAMPRLQRLDLRFYVN 827


>06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,
            6836348-6836416,6836495-6836593,6836681-6836759,
            6837604-6837704,6838645-6838713,6839548-6839588,
            6839793-6841159,6841472-6841575,6841914-6842351,
            6843040-6843567
          Length = 1078

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 22   IQFIYGISNVLKAQHLIFPSFL---NAAFSILDFGLPTFCNQSFMSSTAVEG 168
            + +++  S V+  + L  P+ L   N    + DFGL    N +F+SS +  G
Sbjct: 913  MNYLHNCSPVVVHRDLKSPNLLVDKNWVVKVCDFGLSRMKNSTFLSSRSTAG 964


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,958,959
Number of Sequences: 37544
Number of extensions: 165319
Number of successful extensions: 396
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)