Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b13
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-9|CAI58660.1|  807|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z46381-8|CAA86517.2|  808|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U40417-1|AAA81411.1|  114|Caenorhabditis elegans Hypothetical pr...    27   5.9  
U10402-11|AAA19063.2|  434|Caenorhabditis elegans Gro-1 operon g...    27   5.9  
AY052771-1|AAL14110.1|  434|Caenorhabditis elegans GOP-3 protein.      27   5.9  
AC006747-5|AAF60510.3|  310|Caenorhabditis elegans Hypothetical ...    26   7.8  

>Z46381-9|CAI58660.1|  807|Caenorhabditis elegans Hypothetical
           protein M01F1.4b protein.
          Length = 807

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 4   SLFNLNIQFIYGISNVLKAQHLIFPSFLNAAFSILDFGL 120
           SLF+LNI F+  ++  + A   I P ++ A F I++  L
Sbjct: 674 SLFDLNIVFVPSMAATVFAAIPIMPPYIVAIFGIVELWL 712


>Z46381-8|CAA86517.2|  808|Caenorhabditis elegans Hypothetical
           protein M01F1.4a protein.
          Length = 808

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 4   SLFNLNIQFIYGISNVLKAQHLIFPSFLNAAFSILDFGL 120
           SLF+LNI F+  ++  + A   I P ++ A F I++  L
Sbjct: 675 SLFDLNIVFVPSMAATVFAAIPIMPPYIVAIFGIVELWL 713


>U40417-1|AAA81411.1|  114|Caenorhabditis elegans Hypothetical
           protein T08A9.6 protein.
          Length = 114

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +1

Query: 244 FCVNFLKNTPCTFPKTSKSAV 306
           FC N  KN P TF  TSK AV
Sbjct: 79  FCNNGQKNRPLTFNFTSKRAV 99


>U10402-11|AAA19063.2|  434|Caenorhabditis elegans Gro-1 operon gene
           protein 3 protein.
          Length = 434

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 223 SPSSNAFFCVNFLKNTPCTFPKTSKSAVT 309
           SPSSN  + VNFL   P +F    K+ V+
Sbjct: 82  SPSSNEGYVVNFLVREPKSFTAGVKAGVS 110


>AY052771-1|AAL14110.1|  434|Caenorhabditis elegans GOP-3 protein.
          Length = 434

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 223 SPSSNAFFCVNFLKNTPCTFPKTSKSAVT 309
           SPSSN  + VNFL   P +F    K+ V+
Sbjct: 82  SPSSNEGYVVNFLVREPKSFTAGVKAGVS 110


>AC006747-5|AAF60510.3|  310|Caenorhabditis elegans Hypothetical
           protein Y39A3A.3 protein.
          Length = 310

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 152 DDMKLWLQKVGSPKSKIEKAAFRNEGNIKCCA 57
           D ++++ +K G+    IE      +GNIK C+
Sbjct: 77  DGLEIFCRKFGTSSLSIEMDPLNTDGNIKYCS 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,161,118
Number of Sequences: 27780
Number of extensions: 156863
Number of successful extensions: 412
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)