Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b13
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    27   0.073
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   1.2  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   4.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    20   8.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    20   8.4  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 27.1 bits (57), Expect = 0.073
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 10  FNLNIQFIYGISNVLKAQHLIFPSFLNAAFSILDFGLPTFCNQSFMSSTAVEG 168
           F L I F++G+    K  HL  PS+ +  F+++          SF +S A+EG
Sbjct: 183 FGLAISFVFGMKEKRKEHHLEGPSYNSDIFAMIGTIFLWLFWPSF-NSAALEG 234


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 102 DLRFWASDLL*PKLHVINSSRGSLKLTYNS 191
           D  +W  D+L   +H+ + S GS ++  NS
Sbjct: 162 DHTWWPYDILNCTIHIASWSHGSNEIKLNS 191


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 309 TIYFVHCHHNSNFL*FFF 362
           T  +V CH+  N   FFF
Sbjct: 125 TYQYVQCHYKQNPEKFFF 142


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 317 VNSVTADFEVFGKVQGVFFRKFTQKKALELGLK 219
           +NS+T + +V   V+         KKA  +G K
Sbjct: 866 INSITVEKDVINDVKTQITTNTPAKKATNIGGK 898


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -3

Query: 139 FGYKRSEAQNLRSRKRRSGMREILNAALLGHLKYRK 32
           +  K    +   SRKR S  RE    +     KYRK
Sbjct: 23  YNEKEKLLEERTSRKRYSRSREREQKSYKNERKYRK 58


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 6/24 (25%), Positives = 13/24 (54%)
 Frame = +3

Query: 18  EYTIHLRYFKCPKSAAFNISLIPE 89
           E+ + ++Y+K   +  FN   I +
Sbjct: 296 EFNLTIKYYKSGSTVPFNFMFIAD 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,973
Number of Sequences: 438
Number of extensions: 2304
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)