Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12b10
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 27 2.3
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 27 2.3
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 27 2.3
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 27 3.0
SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyce... 27 3.0
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 4.0
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 26 5.2
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 25 9.1
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 25 9.1
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 27.1 bits (57), Expect = 2.3
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Frame = +3
Query: 306 WCHFQGVKTFRGLHFLSKF*SFCVFDLLLQQILY---FFFAFEWHIY----FCPLLEQRY 464
WC F + RGL +L+ F +F ++L + +Y F+ + + FC L++ Y
Sbjct: 308 WCLFGVLMIARGLIYLALFRNF--LNILKRMAIYCGACFWVYACIFFLTRVFCFLIDTPY 365
Query: 465 FAAK*ITSELNNVYACSHIY*VPL 536
+ I E+ +++A ++Y + L
Sbjct: 366 PQFEKIPLEIYSIFAAINVYIIEL 389
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = -2
Query: 410 KIKDLLQEQIENAKRSKLAEKMKTAKGFYTLEMAPPSSSEEMAKLKEDLKLFQEFMKS 237
+I +++ Q + ++ SKL K + + L + PSS++E +KE + KS
Sbjct: 547 RIYRIIKSQNKMSRSSKLQIKQLYGQVLHALSLPLPSSNDEQTPVKETIPFLHIRKKS 604
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +1
Query: 334 FAVFIFSASFDLFAFSICSCNKSFIFSLLLSGIFTSVHCWNNDILLRNKLPASLTTFT 507
F +FSA FS+C+ S F L F S+ C+ + L LP S+ + T
Sbjct: 2 FFFLVFSACEVFVGFSLCTLVISVPFFFLQMTPFYSILCFLSFFALLLHLPCSIYSHT 59
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 266 LKLFQEFMKSGCYKHLTVKQ 207
LK+++++M G Y HLTV +
Sbjct: 175 LKIYEKYMARGAYAHLTVSK 194
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = -1
Query: 141 EISHRWLSSLKLFQSYKFVQIIMLHR 64
E++ ++S++K ++SYK+V+ I HR
Sbjct: 462 EVNDLYMSNIKPWESYKYVREIESHR 487
>SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 90
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -2
Query: 419 SKEKIKDLLQEQIENAKRSKLAEKMKTAKGFYTLEMAPPSSSEEMAKLKEDLKLFQE 249
SK D +AKRS + K + F+ + E++ KLKE LKL +E
Sbjct: 21 SKASDTDPTLANASSAKRSAFESREKAKEDFFVHQ----HEIEQLRKLKESLKLHRE 73
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 270 RFEIISRIHEIWLLQTPDSQTSV 202
+ E++S+I + LL+ PDSQT V
Sbjct: 400 KVELVSKISDAILLRLPDSQTFV 422
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 388 SCNKSFIFSLLLSGIFTSVHCWNNDILLRNKLPASLTT 501
S KSF+ F SV W ND +++N+L A TT
Sbjct: 282 STGKSFLLHNNSPNKFVSV-AWGNDSVIKNRLMAIDTT 318
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 326 YTLEMAPPSSSEEMAKLKEDLKLFQEFMKSG 234
+T +APP S E + K ED+ F + G
Sbjct: 45 FTKSLAPPPSRETLLKNVEDISKFDVLIIGG 75
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -2
Query: 509 GVNVVKLAGNLFRSKISLFQQWTEVNMP 426
G V+++ G LF+ K +LF++ + +P
Sbjct: 797 GCRVIRMQGTLFKKKDALFEKCFAILIP 824
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,938
Number of Sequences: 5004
Number of extensions: 57411
Number of successful extensions: 179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -