Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b10
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0599 - 23550663-23550849,23553236-23553417                       32   0.33 
05_06_0195 + 26291126-26291316,26292432-26292618                       31   1.0  
03_02_0628 + 9957385-9957888,9957985-9958111,9958541-9958608,995...    28   5.4  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     28   5.4  
07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358     28   7.1  

>01_05_0599 - 23550663-23550849,23553236-23553417
          Length = 122

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 227 KHLTVKQAWLLFLISTEIGLWFFLGETIGK-FHIVGYQV 114
           K L V+   ++ L   E+  WF +GE +G+ F I GY+V
Sbjct: 84  KELKVEDLGIVTLFGVELYAWFCVGEIVGRGFTITGYKV 122


>05_06_0195 + 26291126-26291316,26292432-26292618
          Length = 125

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 227 KHLTVKQAWLLFLISTEIGLWFFLGETIGK-FHIVGYQV 114
           K L V+ A +  L   E+  WF +GE +G+ F   GY V
Sbjct: 87  KDLNVEHAGVAALFGIELYAWFCVGEIVGRGFTFTGYHV 125


>03_02_0628 +
           9957385-9957888,9957985-9958111,9958541-9958608,
           9958695-9958772,9958885-9958949,9959130-9959196,
           9959344-9959526,9959690-9959746,9959857-9959952,
           9960061-9960219
          Length = 467

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -2

Query: 293 EEMAKLKEDLKLFQEFMKSGC 231
           E+M KL +DLK   EFMKS C
Sbjct: 382 EKMVKLIKDLKKDNEFMKSKC 402


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 458  LFQQWTEVNMPLKSKEKIKDLLQEQIENAKRSKLAEK 348
            + ++++     LK  EK+ D+ +EQ EN K S L E+
Sbjct: 2275 MLEKYSVSEKDLKRSEKLNDVEEEQEENDKTSTLKEE 2311


>07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358
          Length = 717

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/81 (23%), Positives = 39/81 (48%)
 Frame = -2

Query: 443 TEVNMPLKSKEKIKDLLQEQIENAKRSKLAEKMKTAKGFYTLEMAPPSSSEEMAKLKEDL 264
           TEV   L+++EK+KD++Q    ++K   L  + +  +  Y  +      S+   + K   
Sbjct: 100 TEVYEALQNREKMKDMVQSDASSSKGEALQVRGRFEQKTYN-DSNDRDKSQSRGRSKSRG 158

Query: 263 KLFQEFMKSGCYKHLTVKQAW 201
           K F ++ K    K+  +++ W
Sbjct: 159 KKFCKYCKK---KNHFIEECW 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,388,787
Number of Sequences: 37544
Number of extensions: 324860
Number of successful extensions: 784
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)