Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b08
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    29   0.97 
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.2  
SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase family|Sc...    27   2.2  
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc...    27   3.9  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.2  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.1  

>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -3

Query: 231 PGNLCYHYERKKPLSTHNACAPPHSSCQLCASSPECQYVNYIHAQP 94
           P +  Y Y R     T  +C+ P + C    +SP   Y+NY    P
Sbjct: 379 PSSRFYEYTRPTYGRTDTSCSAPGAFCSTQINSPS-SYINYSKCAP 423


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 231 PGNLCYHYERKKPLSTHNACAPPHSSCQLCASSPECQY 118
           PGN    Y    P S +N   PP+ + Q  A  P+  Y
Sbjct: 87  PGNASTMYASPPPSSNYNTAKPPYQTSQFYA-RPQSSY 123


>SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +1

Query: 103 VNIVDVLTFWT*G--AELTRRVRRCASIVSRQRFLSFV 210
           VNI D+L FWT G       RVR    + +RQ    FV
Sbjct: 228 VNIADMLQFWTSGKLRSTVHRVRIDPGVKTRQTIAYFV 265


>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -3

Query: 714 CEESPTCYPCLPHCPQSMVYCCDTRPKTP--LRRSSC 610
           C      YP L   P   +YCCD  P+    +++ SC
Sbjct: 64  CGVGNLVYPLLEVQPNLKIYCCDFSPRAIDFVKKHSC 100


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = -3

Query: 306 PYDEVHRYHSEDEQVNN--REHS*SHFPGNLCYHYERKKPLSTHNACAPPHSS 154
           PY+ +HR H    Q +N  R +           H  R  P+ TH +    +SS
Sbjct: 424 PYNGIHRLHESPSQFSNQSRYNWEPILENRSLLHLNRPPPIETHYSYESNNSS 476


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
 Frame = -1

Query: 302 TTRFIVTILRMNRLTIVSTHDHTSRVTFVIITKERNLCRLTMLAHLLTLRVSSAPQVQNV 123
           T+   VT   +  +    +  H S  T V  T   N          L    ++AP   +V
Sbjct: 56  TSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHV 115

Query: 122 NTSTIF----THSHCILVLSPLGRLRVVTIV 42
           N++T      TH +   V+ P   +   T+V
Sbjct: 116 NSTTTVVPPTTHVNTTTVVPPTTHVNTTTVV 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,672
Number of Sequences: 5004
Number of extensions: 54701
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)