Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b08
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1697 - 28795521-28797328,28797430-28797550                       30   1.8  
03_05_0821 - 27960414-27961253                                         29   4.1  

>07_03_1697 - 28795521-28797328,28797430-28797550
          Length = 642

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 219 CYHYERKKPLSTHNACAPPHSSCQLCAS 136
           C H  R  P S H+ C PPH   Q C S
Sbjct: 355 CCHDARHGP-SCHHGCCPPHHGKQACTS 381


>03_05_0821 - 27960414-27961253
          Length = 279

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 743 FLLHLRIQPDVRNHPRATRACHTAHN 666
           FLLH R+ P    HPRA RA    H+
Sbjct: 50  FLLHRRVVPLPSPHPRALRAVSALHS 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,144,104
Number of Sequences: 37544
Number of extensions: 378804
Number of successful extensions: 1110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)