Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b08
         (770 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB039903-1|BAB17050.1|  842|Homo sapiens interferon-responsive f...    34   0.65 
BC108311-1|AAI08312.1|  697|Homo sapiens LEPRE1 protein protein.       33   1.5  
AK075418-1|BAC11608.1|  736|Homo sapiens protein ( Homo sapiens ...    33   1.5  
AK027697-1|BAB55305.1|  736|Homo sapiens protein ( Homo sapiens ...    33   1.5  
AK027680-1|BAB55291.1|  736|Homo sapiens protein ( Homo sapiens ...    33   1.5  
AK027648-1|BAB55264.1|  804|Homo sapiens protein ( Homo sapiens ...    33   1.5  
AF097432-1|AAG31019.1|  736|Homo sapiens GROS1-L protein protein.      33   1.5  
CR457273-1|CAG33554.1|  410|Homo sapiens PHF10 protein.                31   6.0  
BC130511-1|AAI30512.1|   98|Homo sapiens late cornified envelope...    31   6.0  
BC130507-1|AAI30508.1|   98|Homo sapiens late cornified envelope...    31   6.0  
BC110323-1|AAI10324.1|  410|Homo sapiens PHD finger protein 10 p...    31   6.0  
BC087854-1|AAH87854.1|   98|Homo sapiens late cornified envelope...    31   6.0  
BC020954-1|AAH20954.1|  408|Homo sapiens PHD finger protein 10 p...    31   6.0  
AL513547-3|CAI12316.1|  410|Homo sapiens PHD finger protein 10 p...    31   6.0  
AL161636-2|CAI19557.1|   98|Homo sapiens novel small proline ric...    31   6.0  
AK001837-1|BAA91934.1|  410|Homo sapiens protein ( Homo sapiens ...    31   6.0  
AF338735-1|AAK27451.1|  410|Homo sapiens hypothetical PHD zinc f...    31   6.0  
AK222612-1|BAD96332.1|  410|Homo sapiens PHD finger protein 10 i...    30   8.0  

>AB039903-1|BAB17050.1|  842|Homo sapiens interferon-responsive
           finger protein 1 long form protein.
          Length = 842

 Score = 33.9 bits (74), Expect = 0.65
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +1

Query: 85  RMQWLCVNIVDVLTFWT*GAELTRRVRRCASIVSRQRFLSFVMITKVTREV 237
           RM  +C  + DV ++W     LTRR RR + + +R+   S  M +K+   V
Sbjct: 313 RMLRVCRELTDVQSYWAIQGSLTRRERRASGVRTRRSQGSSAMASKILLNV 363


>BC108311-1|AAI08312.1|  697|Homo sapiens LEPRE1 protein protein.
          Length = 697

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = +3

Query: 180 CESTEVSFFRND-----NKGYPGSVIMSAHDC*PVHPQNGNDEPRRRDQLDKKFLRRAYD 344
           C  T + FF ND     N  Y  +++   H    + P+    E R+R  L+K+ L  AYD
Sbjct: 323 CAKTYLLFFPNDEVMNQNLAYYAAMLGEEHTR-SIGPRESAKEYRQRSLLEKELLFFAYD 381

Query: 345 AHGLP 359
             G+P
Sbjct: 382 VFGIP 386


>AK075418-1|BAC11608.1|  736|Homo sapiens protein ( Homo sapiens
           cDNA PSEC0109 fis, clone NT2RP2005671, highly similar to
           Leucine proline-enriched proteoglycan (leprecan) 1. ).
          Length = 736

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = +3

Query: 180 CESTEVSFFRND-----NKGYPGSVIMSAHDC*PVHPQNGNDEPRRRDQLDKKFLRRAYD 344
           C  T + FF ND     N  Y  +++   H    + P+    E R+R  L+K+ L  AYD
Sbjct: 323 CAKTYLLFFPNDEVMNQNLAYYAAMLGEEHTR-SIGPRESAKEYRQRSLLEKELLFFAYD 381

Query: 345 AHGLP 359
             G+P
Sbjct: 382 VFGIP 386


>AK027697-1|BAB55305.1|  736|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14791 fis, clone NT2RP4001064, weakly similar to
           SYNAPTONEMAL COMPLEX PROTEIN SC65. ).
          Length = 736

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = +3

Query: 180 CESTEVSFFRND-----NKGYPGSVIMSAHDC*PVHPQNGNDEPRRRDQLDKKFLRRAYD 344
           C  T + FF ND     N  Y  +++   H    + P+    E R+R  L+K+ L  AYD
Sbjct: 323 CAKTYLLFFPNDEVMNQNLAYYAAMLGEEHTR-SIGPRESAKEYRQRSLLEKELLFFAYD 381

Query: 345 AHGLP 359
             G+P
Sbjct: 382 VFGIP 386


>AK027680-1|BAB55291.1|  736|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14774 fis, clone NT2RP4000051, weakly similar to
           SYNAPTONEMAL COMPLEX PROTEIN SC65. ).
          Length = 736

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = +3

Query: 180 CESTEVSFFRND-----NKGYPGSVIMSAHDC*PVHPQNGNDEPRRRDQLDKKFLRRAYD 344
           C  T + FF ND     N  Y  +++   H    + P+    E R+R  L+K+ L  AYD
Sbjct: 323 CAKTYLLFFPNDEVMNQNLAYYAAMLGEEHTR-SIGPRESAKEYRQRSLLEKELLFFAYD 381

Query: 345 AHGLP 359
             G+P
Sbjct: 382 VFGIP 386


>AK027648-1|BAB55264.1|  804|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14742 fis, clone NT2RP3002650, highly similar to
           Mus musculus growth suppressor 1L (Gros1) mRNA. ).
          Length = 804

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = +3

Query: 180 CESTEVSFFRND-----NKGYPGSVIMSAHDC*PVHPQNGNDEPRRRDQLDKKFLRRAYD 344
           C  T + FF ND     N  Y  +++   H    + P+    E R+R  L+K+ L  AYD
Sbjct: 323 CAKTYLLFFPNDEVMNQNLAYYAAMLGEEHTR-SIGPRESAKEYRQRSLLEKELLFFAYD 381

Query: 345 AHGLP 359
             G+P
Sbjct: 382 VFGIP 386


>AF097432-1|AAG31019.1|  736|Homo sapiens GROS1-L protein protein.
          Length = 736

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = +3

Query: 180 CESTEVSFFRND-----NKGYPGSVIMSAHDC*PVHPQNGNDEPRRRDQLDKKFLRRAYD 344
           C  T + FF ND     N  Y  +++   H    + P+    E R+R  L+K+ L  AYD
Sbjct: 323 CAKTYLLFFPNDEVMNQNLAYYAAMLGEEHTR-SIGPRESAKEYRQRSLLEKELLFFAYD 381

Query: 345 AHGLP 359
             G+P
Sbjct: 382 VFGIP 386


>CR457273-1|CAG33554.1|  410|Homo sapiens PHF10 protein.
          Length = 410

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 768 CGPFAVAPVLVTSSYPTRCEESPTCYPC-LPHCPQSMVYC--CD 646
           C    +  V +  +YP +C E  TC  C  PH  + M++C  CD
Sbjct: 324 CLDMTMELVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCD 367


>BC130511-1|AAI30512.1|   98|Homo sapiens late cornified
           envelope-like proline-rich 1 protein.
          Length = 98

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 732 SSYPTRCEESPTCYPCLPHCPQSMVYCC 649
           S  P+ C   P   PC P CP S  + C
Sbjct: 63  SQSPSSCPPQPCTKPCPPKCPSSCPHAC 90


>BC130507-1|AAI30508.1|   98|Homo sapiens late cornified
           envelope-like proline-rich 1 protein.
          Length = 98

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 732 SSYPTRCEESPTCYPCLPHCPQSMVYCC 649
           S  P+ C   P   PC P CP S  + C
Sbjct: 63  SQSPSSCPPQPCTKPCPPKCPSSCPHAC 90


>BC110323-1|AAI10324.1|  410|Homo sapiens PHD finger protein 10
           protein.
          Length = 410

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 768 CGPFAVAPVLVTSSYPTRCEESPTCYPC-LPHCPQSMVYC--CD 646
           C    +  V +  +YP +C E  TC  C  PH  + M++C  CD
Sbjct: 324 CLDMTMELVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCD 367


>BC087854-1|AAH87854.1|   98|Homo sapiens late cornified
           envelope-like proline-rich 1 protein.
          Length = 98

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 732 SSYPTRCEESPTCYPCLPHCPQSMVYCC 649
           S  P+ C   P   PC P CP S  + C
Sbjct: 63  SQSPSSCPPQPCTKPCPPKCPSSCPHAC 90


>BC020954-1|AAH20954.1|  408|Homo sapiens PHD finger protein 10
           protein.
          Length = 408

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 768 CGPFAVAPVLVTSSYPTRCEESPTCYPC-LPHCPQSMVYC--CD 646
           C    +  V +  +YP +C E  TC  C  PH  + M++C  CD
Sbjct: 322 CLDMTMELVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCD 365


>AL513547-3|CAI12316.1|  410|Homo sapiens PHD finger protein 10
           protein.
          Length = 410

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 768 CGPFAVAPVLVTSSYPTRCEESPTCYPC-LPHCPQSMVYC--CD 646
           C    +  V +  +YP +C E  TC  C  PH  + M++C  CD
Sbjct: 324 CLDMTMELVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCD 367


>AL161636-2|CAI19557.1|   98|Homo sapiens novel small proline rich
           protein protein.
          Length = 98

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 732 SSYPTRCEESPTCYPCLPHCPQSMVYCC 649
           S  P+ C   P   PC P CP S  + C
Sbjct: 63  SQSPSSCPPQPCTKPCPPKCPSSCPHAC 90


>AK001837-1|BAA91934.1|  410|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10975 fis, clone PLACE1001383, weakly similar to
           ZINC-FINGER PROTEIN UBI-D4 . ).
          Length = 410

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 768 CGPFAVAPVLVTSSYPTRCEESPTCYPC-LPHCPQSMVYC--CD 646
           C    +  V +  +YP +C E  TC  C  PH  + M++C  CD
Sbjct: 324 CLDMTMELVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCD 367


>AF338735-1|AAK27451.1|  410|Homo sapiens hypothetical PHD zinc
           finger protein XAP135 protein.
          Length = 410

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 768 CGPFAVAPVLVTSSYPTRCEESPTCYPC-LPHCPQSMVYC--CD 646
           C    +  V +  +YP +C E  TC  C  PH  + M++C  CD
Sbjct: 324 CLDMTMELVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCD 367


>AK222612-1|BAD96332.1|  410|Homo sapiens PHD finger protein 10
           isoform a variant protein.
          Length = 410

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -3

Query: 768 CGPFAVAPVLVTSSYPTRCEESPTCYPC-LPHCPQSMVYC--CD 646
           C    +  V    +YP +C E  TC  C  PH  + M++C  CD
Sbjct: 324 CLDMTMELVSTIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCD 367


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,791,033
Number of Sequences: 237096
Number of extensions: 2123278
Number of successful extensions: 5202
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5202
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)