Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b08
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    30   1.6  
U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = -3

Query: 768  CGPFAVAPVLVTSSYPTRCEESPTCYP-CLPH-CPQSMVYCCDTRPKTPLRRSSCCDSKE 595
            CG   ++ V ++  Y   C  S T    C P  CP     CC  R K  + R+  C S +
Sbjct: 829  CGVTTLSRVCLSQDYNCACSGSTTKQSECAPAPCPFPRTSCCGARKKVIVGRTFECSSAD 888


>U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical
           protein F35A5.4 protein.
          Length = 524

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = -3

Query: 756 AVAPVLVTSSYPTRCEES---PTCYP-CLPHCPQSMVYCCDTRPKTPLRRSSCCDS 601
           AV     T++ P+ C ++   P C P CLP C Q +       P  P   S C  S
Sbjct: 214 AVTCSTCTNNCPSICSQANCIPQCMPRCLPTCIQQIQISVPLPPPAPRCDSMCMPS 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,213,354
Number of Sequences: 27780
Number of extensions: 325557
Number of successful extensions: 1097
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)