Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12b07
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0064 + 444888-444959,445073-445277,445736-445901,446029-44... 31 0.46
02_03_0286 + 17317316-17317516,17317610-17318245 30 1.1
09_01_0173 + 2495864-2496312,2497420-2497457,2497915-2498123,249... 29 1.8
04_04_0692 - 27307349-27307728,27308381-27308546 29 2.4
02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459 29 2.4
04_01_0356 + 4663723-4664253 29 3.2
03_06_0230 - 32518749-32519143,32519301-32519589 29 3.2
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498... 28 5.6
11_06_0714 + 26537196-26537248,26537391-26537725,26540032-265401... 27 9.9
05_04_0086 - 17797792-17797810,17798049-17798234,17798319-177984... 27 9.9
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 27 9.9
>08_01_0064 +
444888-444959,445073-445277,445736-445901,446029-446251,
446982-447058,447370-447557,447845-447942,448202-448335,
448421-448555,448832-448960,449263-449632,449897-450018,
450155-450274,450396-450626,450706-450894,450978-451089,
451193-451438
Length = 938
Score = 31.5 bits (68), Expect = 0.46
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 374 RESMTAVYRIYEEFCNETTLHGLKHTVEKSLHWFE 478
++ + Y+ Y EFC + + L+H EK +H+ E
Sbjct: 842 QDENSGAYKHYSEFCQGSVMDPLEHDPEKEMHYAE 876
>02_03_0286 + 17317316-17317516,17317610-17318245
Length = 278
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 102 CSRDTASVASCRDARASALAPCSDGRWI--SIVNENRI 209
C R T +C A AL+PC+ RW+ SI N R+
Sbjct: 3 CKRPTPDGDACSATAAVALSPCNKPRWLFMSIFNYKRM 40
>09_01_0173 +
2495864-2496312,2497420-2497457,2497915-2498123,
2498894-2499205
Length = 335
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 4 EKLQKFQMTFPVSNVKQLFRAPFSVSLSKVAQTAVGTPPLWLPAATPVLRLWHL 165
EK + F ++ +K +F + + S VA+T G PPL +P T W L
Sbjct: 253 EKFELFGQNIDLTPLKGIFSS-IENAASSVARTISGQPPLKIPIRTDNAESWLL 305
>04_04_0692 - 27307349-27307728,27308381-27308546
Length = 181
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -2
Query: 287 NTGE*CSNAKRRKTIGELHGNL--GLDLDPILVHDRDPTTITTRCQSRSTGVAAGS 126
+TG + K T+ L G+ G L D DPTT TT S +TG A GS
Sbjct: 107 STGHCGAGMKLTVTVATLSGSAAGGTRLAKPSSSDADPTTTTTTRTSSATGGATGS 162
>02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459
Length = 867
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -2
Query: 251 KTIGELHGNLGLDLDPILVHDRDPTTITTRCQSRSTGVAAGSHRGGVPTAV 99
+ IG LH + LDLD ++ PTTI +S ++ G +P ++
Sbjct: 225 REIGMLHSLVALDLDHNNINGSIPTTIGNLTSLKSLDLSTNEITGFIPESI 275
>04_01_0356 + 4663723-4664253
Length = 176
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 498 QYYYFYLSNQCKLFSTVCLRPCKVVSLQNSSYILYTAVM 382
+YY FY N S+VC+ +V L + Y+ +T+VM
Sbjct: 67 RYYVFYYCNATSFASSVCI----IVLLATNFYLSHTSVM 101
>03_06_0230 - 32518749-32519143,32519301-32519589
Length = 227
Score = 28.7 bits (61), Expect = 3.2
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +3
Query: 9 ITKISNDVSSLKCQTTL-----SRAIFCFTLQSCTDCSRDTASVASCRDARASALAPCSD 173
+ +++ DVS+ + L SRA + S + C+R A VA+ R AR++A A
Sbjct: 7 VARLARDVSAARDAARLAAAAASRAARSSAVASSSPCARSAAVVAARRAARSAAAAASRA 66
Query: 174 GRWIS 188
R +S
Sbjct: 67 ARAVS 71
>04_04_0468 - 25447774-25447945,25449016-25449130,25449541-25449877,
25450299-25450628,25451090-25451362,25451471-25451929,
25452307-25452516,25452617-25452828,25453304-25453404,
25453584-25454008,25454167-25454360,25454436-25454701,
25454809-25455015,25455121-25455281,25455741-25455933,
25456158-25456251,25457238-25457373,25458074-25458202,
25458315-25458449,25458549-25458613,25459875-25459950,
25460775-25460885,25461194-25461371,25462340-25462434
Length = 1557
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 390 LCTEYTRNSAMKRPYTASNILSRRACIGLRGKNNNIE 500
+CT RNS R + A LS+ G + +N ++E
Sbjct: 1326 ICTAANRNSKAARKFAAQETLSKLKNYGYKHRNKSLE 1362
>11_06_0714 +
26537196-26537248,26537391-26537725,26540032-26540104,
26540442-26540790,26542766-26543248,26544899-26545027,
26545116-26545244
Length = 516
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 325 GGNSAVCNVPRLSILGSDVQMRRGG 251
G N+ + +VP+LS+LG ++ RGG
Sbjct: 87 GINANLVSVPQLSLLGLNISFDRGG 111
>05_04_0086 -
17797792-17797810,17798049-17798234,17798319-17798407,
17798518-17798712,17799364-17799525,17799609-17799681,
17799929-17799996,17800086-17800133,17800223-17800288,
17800418-17800488,17800825-17800891
Length = 347
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 35 QSQMSNNSFARHFLFHSPKLHRLQSGHRLCGFLP 136
Q ++ N FA HF H P R+ + H + LP
Sbjct: 200 QPRIGNAVFASHFKCHLPNAIRVTNAHDIVPHLP 233
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 410 PRIFCTQPSWTPSPRASRTSYAS 342
P++ T+PS TP P+A +T AS
Sbjct: 1732 PKVKETEPSRTPEPKAPKTEEAS 1754
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,965,467
Number of Sequences: 37544
Number of extensions: 306764
Number of successful extensions: 1043
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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