Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12b06
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1055 - 33798162-33798290,33798417-33798604,33798707-337987... 119 3e-27
12_02_0137 + 14153603-14153629,14154136-14154586,14155066-141552... 107 7e-24
06_03_1219 - 28491185-28494415 30 1.7
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 29 4.0
02_04_0572 + 23972319-23973683 29 4.0
02_02_0032 - 6227556-6227926,6228322-6231085 29 4.0
06_03_1220 - 28505306-28508497 29 5.3
06_03_1217 - 28484007-28487237 29 5.3
04_02_0006 + 8455219-8457469,8457560-8457924 29 5.3
02_02_0034 - 6246183-6246553,6246672-6249699 29 5.3
02_01_0168 + 1162447-1162866,1162940-1163317,1163606-1163829,116... 29 5.3
01_06_0224 - 27672201-27672336,27672439-27672507,27672948-276730... 29 5.3
11_06_0129 - 20397179-20397537,20397749-20400497 28 9.3
05_05_0317 + 24039343-24042717 28 9.3
04_03_0910 + 20751014-20753437 28 9.3
04_01_0112 + 1151242-1151272,1151722-1151928,1151996-1152318,115... 28 9.3
03_05_0105 - 20861130-20861384,20861472-20862262,20862364-208626... 28 9.3
02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050 28 9.3
02_02_0473 - 10727908-10728052,10728367-10728440,10728660-107288... 28 9.3
>02_05_1055 - 33798162-33798290,33798417-33798604,33798707-33798767,
33799045-33799122,33799250-33799472,33799599-33799824,
33799922-33800116,33800210-33800627,33800904-33801182
Length = 598
Score = 119 bits (286), Expect = 3e-27
Identities = 69/214 (32%), Positives = 116/214 (54%), Gaps = 2/214 (0%)
Frame = -1
Query: 718 KGDMAGAGCILAITRTAARLKLP-INIRGILPLCELMPNGNSPKFGDVAYSANGKSLHIR 542
K DM G+ + + ++K P + + I+ CE M +G + GD+ ++NGK++ +
Sbjct: 390 KFDMGGSAAVFGAAKALGQIKPPGVEVHFIVAACENMISGTGMRPGDIVTASNGKTIEVN 449
Query: 541 LPSREGRLLIADSLVYARNYWPKLIIDIGTMSKELIYTLDGSACGCYTNSDELFCYLQSA 362
EGRL +AD+LVYA N IID+ T++ + L S G +T SDEL + +A
Sbjct: 450 NTDAEGRLTLADALVYACNQGVDKIIDLATLTGACVVALGPSIAGIFTPSDELAKEVAAA 509
Query: 361 SSQTGDRIWRMPLWKFYEDRVRDCHTADVANTGRDEFGDSPNCAAFLKQFICD-TKWVHL 185
S +G++ WRMPL + Y + ++ AD+ NTG + G S A FLKQF+ + +W+H+
Sbjct: 510 SEISGEKFWRMPLEESYWESMKS-GVADMVNTGGRQ-GGSITAALFLKQFVDEKVQWMHI 567
Query: 184 DTYNIAYSKGRDFPYLRRGMTGRPTRTILEFIFQ 83
D ++ +R TG T++E++ +
Sbjct: 568 DMAGPVWND------KKRAATGFGVSTLVEWVLK 595
>12_02_0137 +
14153603-14153629,14154136-14154586,14155066-14155260,
14155366-14155628,14155964-14156104,14156188-14156283,
14156672-14156749,14157134-14157194,14157324-14157511,
14158441-14158569
Length = 542
Score = 107 bits (258), Expect = 7e-24
Identities = 67/217 (30%), Positives = 112/217 (51%), Gaps = 2/217 (0%)
Frame = -1
Query: 733 TFVI*KGDMAGAGCILAITRTAARLKLP-INIRGILPLCELMPNGNSPKFGDVAYSANGK 557
T + K DM G+ + + ++K P + + I CE M +G + GD+ ++NGK
Sbjct: 329 TIELMKKDMGGSAALFGAAKALGQIKPPGVEVHFISAACENMISGTGMRPGDIVTASNGK 388
Query: 556 SLHIRLPSREGRLLIADSLVYARNYWPKLIIDIGTMSKELIYTLDGSACGCYTNSDELFC 377
++ + EGRL +AD+LVYA IID+ T++ L S G T SDEL
Sbjct: 389 TIEVDNTDAEGRLTLADALVYACKLGVDKIIDLATLTGYCRIALGPSIAGILTPSDELDK 448
Query: 376 YLQSASSQTGDRIWRMPLWKFYEDRVRDCHTADVANTGRDEFGDSPNCAAFLKQFICD-T 200
+ +A +G++ WR+PL + Y ++++ AD+ NTG G + FLKQF+ +
Sbjct: 449 EVAAAYEASGEKFWRLPLEESYWEQMKS-SVADMLNTG-SPLGGAITAGLFLKQFVDEKV 506
Query: 199 KWVHLDTYNIAYSKGRDFPYLRRGMTGRPTRTILEFI 89
KW+H+D G + Y ++ TG T++E++
Sbjct: 507 KWMHVD------MAGPVWNYKKQEATGFGVSTLVEWV 537
>06_03_1219 - 28491185-28494415
Length = 1076
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 540 NLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVMANMHPAPAMSP 716
NL+ FP A++ +P L NS G +P + + +LA + + NM A+SP
Sbjct: 162 NLLAGQFPSAIWEHTPRLVSLNASNNSFRGTIPSLCVSCPALAVLDLSVNMLTG-AISP 219
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 528 SRDGNLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVM 683
S +GN + P L+ +P+L FG NS +G +P + SLS +L M
Sbjct: 186 SLEGNSLSGQIPSFLFNNTPSLRYLSFGNNSLSGPIPD-GVASLSQLEILDM 236
>02_04_0572 + 23972319-23973683
Length = 454
Score = 29.1 bits (62), Expect = 4.0
Identities = 25/76 (32%), Positives = 39/76 (51%)
Frame = +3
Query: 435 ISSFDIVPISIISFGQ*LRAYTKLSAMRSRPSRDGNLMCKDFPLALYATSPNLGLFPFGI 614
+SS D+ ++IIS G+ RA LS++R + N + K P + PNL G+
Sbjct: 194 LSSLDL-SVNIIS-GEIPRALYNLSSLRML-FLEMNFLGKSLPSNIGYALPNLQWLLLGV 250
Query: 615 NSHNGRMPRILIGSLS 662
N G +P L G++S
Sbjct: 251 NMFQGNIPGSL-GNIS 265
>02_02_0032 - 6227556-6227926,6228322-6231085
Length = 1044
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 540 NLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVMAN 689
N + D P L +SP+ G+N G +P L S SL + +M N
Sbjct: 208 NALTGDIP-PLLGSSPSFIYVDLGVNQLTGGIPEFLANSSSLQVIRLMQN 256
>06_03_1220 - 28505306-28508497
Length = 1063
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 540 NLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVMANM 692
NL+ FP A++ +P L NS +G +P + + +LA + + N+
Sbjct: 158 NLLAGQFPSAIWEHTPRLVSLNASNNSFHGTIPSLCVSCPALAVLDLSVNV 208
>06_03_1217 - 28484007-28487237
Length = 1076
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 540 NLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVMANM 692
NL+ FP A++ +P L NS +G +P + + +LA + + N+
Sbjct: 166 NLLAGQFPSAIWEHTPRLVSLNASNNSFHGSIPSLCVSCPALAVLDLSVNV 216
>04_02_0006 + 8455219-8457469,8457560-8457924
Length = 871
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 528 SRDGNLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVMANM 692
S +GN + P ++ S N F FG N +GR+P L ++L + + +NM
Sbjct: 179 SMEGNNLNGSLPKSVGNLSTNFEWFKFGGNQISGRIPDELGNLVNLTLLDINSNM 233
>02_02_0034 - 6246183-6246553,6246672-6249699
Length = 1132
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 540 NLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVMAN 689
N + D P L +SP+ G N GR+P L S SL + +M N
Sbjct: 208 NALTGDIP-PLLGSSPSFVYVDLGGNQLTGRIPEFLANSSSLQVLRLMQN 256
>02_01_0168 +
1162447-1162866,1162940-1163317,1163606-1163829,
1163929-1163992,1164521-1164717,1164849-1165062
Length = 498
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = -1
Query: 478 PKLIIDIGTMSKELIYTLDGSACGCYTNSDELFCYLQSASSQTGDRIWR-MPLWKFYEDR 302
PK++ + M +DG+ C + D+L + + +W W F+ D
Sbjct: 355 PKILPCLQAMEPTYTVVVDGTECAYFDQVDQLKDFGAENKESIAELLWAFFHYWAFHHDY 414
Query: 301 VRDCHTADVANT 266
D + + NT
Sbjct: 415 RNDVISVRMGNT 426
>01_06_0224 -
27672201-27672336,27672439-27672507,27672948-27673040,
27673245-27673336,27673491-27673577,27673734-27673832,
27673927-27674026,27674113-27674171,27674361-27674720
Length = 364
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 568 ANGKSLHIRLPSREGRLLIADSLVYARNYWPKLII-DIGTMSKELIYTLDG 419
A G ++ + + RLLI +LV N W ++++ D G M ELI L G
Sbjct: 289 AGGTGETVKSAAAQPRLLIPVALVMMYNRWNEILVPDYGFMHLELIPMLVG 339
>11_06_0129 - 20397179-20397537,20397749-20400497
Length = 1035
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +3
Query: 504 LSAMRSRPSRDGNLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVM 683
+S++R+ S GN++ P + T P+L N +G++P L S +L+ +++
Sbjct: 265 ISSLRAL-SVQGNMLSGTIPANAFETLPHLEELYMDHNHLHGKIPVSLGNSSNLSMIILG 323
Query: 684 ANM 692
AN+
Sbjct: 324 ANL 326
>05_05_0317 + 24039343-24042717
Length = 1124
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 102 FSNSYFSYWLTQNCNYYLIKLF*CTPCKI 16
F YF WL++ C+ I L CT C I
Sbjct: 763 FVGFYFPKWLSRLCHLQTIHLSDCTNCSI 791
>04_03_0910 + 20751014-20753437
Length = 807
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -1
Query: 583 DVAYSANGKSLHIRLPSRE 527
D + SANG++LHIRL +RE
Sbjct: 419 DDSTSANGETLHIRLAARE 437
>04_01_0112 +
1151242-1151272,1151722-1151928,1151996-1152318,
1152552-1153793
Length = 600
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 576 ATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVMANMHPAPAMSPFH 722
A + +L + N+ N + LIG+LS+ L+++N M PFH
Sbjct: 229 AEATSLEVLDLSSNNLNEEILPTLIGNLSILTSLLLSNNDLTGPMPPFH 277
>03_05_0105 -
20861130-20861384,20861472-20862262,20862364-20862618,
20862713-20862827,20862959-20863011,20863113-20863373,
20863699-20863749,20863863-20864114,20864504-20864726,
20865317-20865460
Length = 799
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1
Query: 517 LIADSLVYARNYWPKLIIDIGTMSKELIYTLDGSACGCYTNSDELFCYL 371
LI + R + PK IID +K+ + GS C+T S+ LF L
Sbjct: 271 LIKHDISVLRAFNPKYIIDYFRRNKKEGWVSLGSILLCFTGSEALFANL 319
>02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050
Length = 709
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = +3
Query: 528 SRDGNLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVMAN 689
S N + P AL A PNL L N GR+P L L A VLV+++
Sbjct: 105 SLKSNALTGPIPDALPAALPNLKLLYLSANRLQGRIPPTL-ALLHRATVLVLSS 157
>02_02_0473 - 10727908-10728052,10728367-10728440,10728660-10728818,
10729606-10729774,10730216-10730355,10730469-10730879,
10731055-10731334,10731508-10731571,10731995-10733281,
10733363-10733822,10733988-10734356
Length = 1185
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 343 RIWRMPLWKFYEDRVRDCHTADVANTGRDEFGDSP 239
R W P +FY+D + D H D+ G + G +P
Sbjct: 1019 RRWSGPTSQFYDDDLHDAHDHDI--LGSSQLGGAP 1051
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,367,574
Number of Sequences: 37544
Number of extensions: 464833
Number of successful extensions: 1027
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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