Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b06
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15313-6|AAA28198.1|  491|Caenorhabditis elegans Leucine aminope...    41   8e-04
Z78018-4|CAB01448.1|  522|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z71186-3|CAA94914.1|  222|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U00040-5|AAA50666.1|  934|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>L15313-6|AAA28198.1|  491|Caenorhabditis elegans Leucine
           aminopeptidase protein 1 protein.
          Length = 491

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 9/188 (4%)
 Frame = -1

Query: 718 KGDMAGAGCILAITRTAARLKLPINIRGILPLCE--LMPNGNSPKFGDVAYSANGKSLHI 545
           K DM GA  +L       +      +   L + E  + P  N P   D+    +GK++ I
Sbjct: 273 KRDMGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANKPD--DIIKMLSGKTVEI 330

Query: 544 RLPSREGRLLIADSLVYAR-NYWPKLIIDIGTMSKELIYTLDGSACG-CYTNSDELFCYL 371
                EGRL++AD + YA+       I D+ T++    + L G   G   TN ++L   +
Sbjct: 331 NNTDAEGRLILADGVFYAKETLKATTIFDMATLTGAQAW-LSGRLHGAAMTNDEQLENEI 389

Query: 370 QSASSQTGDRIWRMPLWK--FYEDRVRDCHTADVANTGRDEFGDSPNCAAFLKQFIC--- 206
             A   +GD +  M      F+ D          +N G+ +   S     F+   I    
Sbjct: 390 IKAGKASGDLVAPMLFAPDLFFGDLKSSIADMKNSNLGKMDGPPSAVAGLFIGAHIGFGE 449

Query: 205 DTKWVHLD 182
             +W+HLD
Sbjct: 450 GLRWLHLD 457


>Z78018-4|CAB01448.1|  522|Caenorhabditis elegans Hypothetical
           protein W07G4.4 protein.
          Length = 522

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -1

Query: 652 PINIRGILPLCELMPNGNSPKF--GDVAYSANGKSLHIRLPSREGRLLIADSLVYAR 488
           P NI+ +  +C +  +  S  +   +V  S +GK +HI     EGRL + D L  A+
Sbjct: 313 PKNIKAVGYMCMVRNSIGSHAYTCDEVITSRSGKRIHIYNTDAEGRLTMLDPLTLAK 369


>Z71186-3|CAA94914.1|  222|Caenorhabditis elegans Hypothetical
           protein F23D12.4 protein.
          Length = 222

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 472 LIIDIGTMSKELIYTLDGSACGCYTNSDELF-CYLQSASSQTGDRIWRMP 326
           +I+DI  +   L   +D  A     NSDE+F C +   S  +  +IW  P
Sbjct: 162 VILDIINLVNHLKIKMDTLAVAGKNNSDEVFKCIIDEVSRVSSLQIWGFP 211


>U00040-5|AAA50666.1|  934|Caenorhabditis elegans Hypothetical
           protein C18H2.4 protein.
          Length = 934

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 298 LLDLRKISIMAFAKSYHRSDYSLIEGSKTIH 390
           L+ + + S +AF +SYH+S +  IE SK +H
Sbjct: 322 LMKILEESWIAFERSYHQSKHVGIELSKLVH 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,369,732
Number of Sequences: 27780
Number of extensions: 402024
Number of successful extensions: 854
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)