Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12b05
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0796 + 27787401-27788831                                         32   0.59 
02_02_0360 + 9400082-9400524,9406729-9406936                           31   0.79 
11_01_0199 + 1563483-1563572,1563673-1563852,1564091-1564402,156...    31   1.4  
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973...    29   3.2  
02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393           28   7.3  
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311...    28   9.7  

>03_05_0796 + 27787401-27788831
          Length = 476

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 113 NDNIPGFIEASAAKADEESNAADAGCHKCLEKGKVCM 3
           ND I G + AS+   D +        HKC E GKVC+
Sbjct: 380 NDKIAGVVVASSHDGDSDVGKMKIVQHKCDECGKVCL 416


>02_02_0360 + 9400082-9400524,9406729-9406936
          Length = 216

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -2

Query: 326 ESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVPFNDRDDINEPN 153
           ES E+   NGD+  E  ++ T + ++  E VSN +     +D  +   +  DD   PN
Sbjct: 153 ESEEDDDDNGDDEEEVSNDDTTEEVSDEEEVSNDDTTEEEDDLEDDDKSSSDDDEAPN 210


>11_01_0199 +
           1563483-1563572,1563673-1563852,1564091-1564402,
           1564753-1564800,1565205-1565438,1565632-1566219
          Length = 483

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
 Frame = -2

Query: 296 DEPTEKVSNKTNKNITQHES-VSNANRRAIAEDESNVPFNDRDDINEPNIEFGKNEIIGS 120
           D P +K  N+ ++ +    + V  AN  A   + + V +  +D+I+E     G  EII S
Sbjct: 387 DNPDDKNRNEDDRLVPFASTWVQQANEGARTSEIATVEY--KDEISED----GGKEIISS 440

Query: 119 VINDNIPGFIEASAAKADEESNAADAG 39
             +      IEA+AA +++ESN   AG
Sbjct: 441 NTSSEQTS-IEANAAASEDESNEGIAG 466


>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
            21997494-21997838,21998323-21999240,21999312-21999640,
            21999709-21999832,21999901-22000071,22000188-22001648,
            22002647-22002910,22003866-22004189
          Length = 1831

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 22/77 (28%), Positives = 41/77 (53%)
 Frame = -2

Query: 275  SNKTNKNITQHESVSNANRRAIAEDESNVPFNDRDDINEPNIEFGKNEIIGSVINDNIPG 96
            + K  K+    E +SNA   ++ + +S +  ND++  N+P+   G +  IG+ +N     
Sbjct: 1226 TTKLEKSSKGSEVLSNAKEGSLKQSQSPLHANDKEP-NQPDQSNGNSSRIGAGLNG---- 1280

Query: 95   FIEASAAKADEESNAAD 45
             +E + AK +  SN+AD
Sbjct: 1281 -MEDAIAKIN-HSNSAD 1295


>02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393
          Length = 322

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = +2

Query: 536 RRRGLDQSWTL-LHVRCRHGSRSTTAD--ISQSTPRGEWRPNSVECSRL 673
           R R L    TL  H R RHG+R         +   RG+WR +   C RL
Sbjct: 225 RARPLKDFRTLQTHYRRRHGARDFACRRCAKRFAVRGDWRTHEKNCGRL 273


>04_03_0181 -
           12327281-12328620,12330922-12331015,12331079-12331183,
           12331404-12332592,12333268-12333461
          Length = 973

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 275 SNKTNKNITQHESVSNANRRAIAEDESNVPFNDRDDINEPNIE 147
           S+K      Q    ++A  +   EDE ++ F + + I+ P+IE
Sbjct: 289 SSKARSGAPQRAMAASATSKEEKEDEPSMQFEESESISTPSIE 331


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,783,195
Number of Sequences: 37544
Number of extensions: 456004
Number of successful extensions: 1301
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)