Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12b05
(786 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64846-2|AAG24112.1| 332|Caenorhabditis elegans Serpentine rece... 30 1.6
AF040650-5|AAB95008.1| 325|Caenorhabditis elegans Hypothetical ... 30 1.6
U39470-3|AAC71120.1| 377|Caenorhabditis elegans Hypothetical pr... 30 2.2
U37424-1|AAA80355.1| 359|Caenorhabditis elegans NHR-2 protein. 30 2.2
AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear recep... 30 2.2
AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear recep... 30 2.2
AF000195-4|AAC24271.2| 359|Caenorhabditis elegans Nuclear hormo... 30 2.2
Z82282-9|CAB05281.2| 361|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z69717-2|CAA93532.2| 204|Caenorhabditis elegans Hypothetical pr... 28 8.7
>U64846-2|AAG24112.1| 332|Caenorhabditis elegans Serpentine
receptor, class t protein35 protein.
Length = 332
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 219 SISVRYGLVLCDVLVSFIGNFLRWLVAIEMEVLC*FVNI 335
S + + L + DVLV FI + L ++AI+ V C + N+
Sbjct: 69 SFKIMFHLAVTDVLVIFINSILTGILAIQGAVYCTYPNL 107
>AF040650-5|AAB95008.1| 325|Caenorhabditis elegans Hypothetical
protein T04B8.2 protein.
Length = 325
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Frame = -2
Query: 350 ELVNTNVYESTENFHF---NGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVPFN 180
+++ N Y +TE+ F N D E ++ K + + + N R +D S++ +
Sbjct: 145 KILGDNSYITTEDMEFILKNFDLKYEFLTRCLQKTMIDFKLLVNLPRLEFWKD-SDLTLD 203
Query: 179 DRDDINEPNIEFGKNEIIGSVINDNIPGFIEASAAK 72
+N I FGKN I+ +ND I ++ + +K
Sbjct: 204 HLKMMNCKTIRFGKNAIVPKQLNDYIFHWLAGNLSK 239
>U39470-3|AAC71120.1| 377|Caenorhabditis elegans Hypothetical
protein T08H4.3 protein.
Length = 377
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/97 (22%), Positives = 38/97 (39%)
Frame = -2
Query: 347 LVNTNVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVPFNDRDD 168
L N N + +EN HF G + S+ N ++ +S RR + SN N
Sbjct: 76 LYNDNTMQKSENDHFTGMNLSTSASSSGNSTSSKDQS-----RRQFYTESSNSSGNGAAA 130
Query: 167 INEPNIEFGKNEIIGSVINDNIPGFIEASAAKADEES 57
+ N E V N ++ F +K+++ +
Sbjct: 131 TSGSNGSSSSTESKSDVFNISMNAFAATPGSKSEDHN 167
>U37424-1|AAA80355.1| 359|Caenorhabditis elegans NHR-2 protein.
Length = 359
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -2
Query: 335 NVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVP 186
N+ ST++ NG+E +K ++ +N S S R D +N P
Sbjct: 23 NILSSTQSSPDNGNEADDKENSSVRRNTFPASSASTKKPRGTPYDRTNTP 72
>AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 474
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -2
Query: 335 NVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVP 186
N+ ST++ NG+E +K ++ +N S S R D +N P
Sbjct: 138 NILSSTQSSPDNGNEADDKENSSVRRNTFPASSASTKKPRGTPYDRTNTP 187
>AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 453
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -2
Query: 335 NVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVP 186
N+ ST++ NG+E +K ++ +N S S R D +N P
Sbjct: 134 NILSSTQSSPDNGNEADDKENSSVRRNTFPASSASTKKPRGTPYDRTNTP 183
>AF000195-4|AAC24271.2| 359|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 2 protein.
Length = 359
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -2
Query: 335 NVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVP 186
N+ ST++ NG+E +K ++ +N S S R D +N P
Sbjct: 23 NILSSTQSSPDNGNEADDKENSSVRRNTFPASSASTKKPRGTPYDRTNTP 72
>Z82282-9|CAB05281.2| 361|Caenorhabditis elegans Hypothetical
protein T07G12.12 protein.
Length = 361
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = -2
Query: 293 EPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVPFNDRDDINEPNIEFGKNEII-GSV 117
EP E++++ N + + + ++ +N+ D DDIN P + G++E + V
Sbjct: 103 EPEEELNSSHESNNSVEKVMDMIIEDVVSNHTTNIA--DGDDINSPIVSSGQSEFLQDGV 160
Query: 116 IND-NIPGFIEASAAKADEE 60
ND NI + E + +++
Sbjct: 161 DNDGNIDDYEEYQSLPPNDD 180
>Z69717-2|CAA93532.2| 204|Caenorhabditis elegans Hypothetical
protein E01G6.2 protein.
Length = 204
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/74 (21%), Positives = 30/74 (40%)
Frame = -2
Query: 269 KTNKNITQHESVSNANRRAIAEDESNVPFNDRDDINEPNIEFGKNEIIGSVINDNIPGFI 90
K +K T E+ N + D N + +++ +FGK+ + ++ D +
Sbjct: 33 KNDKERTGKENKGIVNSNTMPADMDGGKKNKKTKVSKNGKDFGKSMSMDVLLEDEAAALV 92
Query: 89 EASAAKADEESNAA 48
EA DE+ A
Sbjct: 93 EALETFGDEKPTVA 106
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,657,075
Number of Sequences: 27780
Number of extensions: 380423
Number of successful extensions: 1177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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